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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0296600.1

AAATTAACAAGCAGTCACTATCACGATATAATATGATACATCAGAGTTTTGTGAGGTGATTAATTAAAATTCAGGTATAATTAAACTTTCTCTAGTTTTCTATCCTAGCTAGAGCTCCCGGGCGTGTCTAGTACTAGACAAACTCATCAGCCTCAGAAGAGCAGCGAGCCGCCTGCCGAATAGGCGGCCGGCGGCGAGCCGGCGCTGCTGAGCGGCGGGCTGTAGTAGTCGCCGGCGGCGGCGGCGTACTGCAGCGCCGCGGCGGCGGCGGCGGGGCTCGCGTGGTTGTGGACGCCGTCGTAGGTGGTGATGACGTAGCGGTGGTCCTCCCGGTCTCTCTCCACTCGCTTCTTCACGTTGCACCCCTCCGTCGAGCACCGGTAGTAGTTTCTTGGATTTGGGCTGTTCTTGACAGCTTTCTTGCCGTACTTCCTCCACTTGAAGCCATCATCAAGAATCTCCACCTCCGACCTCGTCCTGAACCCGATCCTCCCGTTCACCCTCGCCCTCATCTTCTCCTCGCTCTCGTACCTCATCCTTCTTACATAGTGTTTTCATTTTCCGGGTACTCCTGGGCCGGAGCTGGGAGAGAGCAGTCGAAATCGAGCTCGCCGGAGAATAAGTTGGCGTCGATAGCGGCGGCCGAGAACTCCGGCGTGTAGCTGGCCATGAAAGGGGATGAGGAGTAGGAGTAGGAGTTGCTGAAGAAGAAAGCTTCAGGGTTCAGTCCTACGGAAGCCGCCATTGCACAGTGCTGAACCTTTTCACCGGTGAATTTTCTTCTGTGATGGTAATGGAT

Coding Potentia
Explanation CPC Score
noncoding -1.05074
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0296600.1 5 4999440 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0296600.1 osa-miR172a Cleavage 4.5 12.817 1 21
Osa05LNT0296600.1 osa-miR172b Cleavage 5.0 12.817 1 21
Osa05LNT0296600.1 osa-miR172d-3p Cleavage 4.5 12.817 1 21
Osa05LNT0296600.1 osa-miR437 Cleavage 4.5 10.279 1 21
Osa05LNT0296600.1 osa-miR1426 Cleavage 4.0 12.817 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus