>Osa05LNT0297200.1

CGGGCAACGAGCAAGCCATCCACACTCTTCTCCTTCCTCCATCCTCCGGCGTACGGTACGGGGACTACTGGTTCCCCTCGCCTCGCGGCGGGGCGCGGCCGCGGCGGCAATGGCGCATCAAATTAGGGTTTCGCTCTCACCCTCTTCCTCCTTCTCGGCCCCCACCCGGCGCGGCTCGCAAGGTGCACATGCCCACTGATATTGGAGGAACATAGATGGTGAGGATAATGGAGTACATGAAGAATAAAGTGGGTGACAAGTGTTGGGAAGCGGGAACATAGTGTTGGAGAGGTCTTTGAGTCCAAAGCACAATGGTGTCGCGACTCGTGTACAGATGGTGCATATCATATGGTGGGGGTGGTGATGCCGATTGAAAGCAGTGTGGCAAGTTCGATGCGGACATCTAGTACGGCAGCGATTTTTCTTTTTCAAGATAGGCACGCCACCGTGCTAGCTTCCTCCCCTCTCCCCTTAGCAGAATCATGCATTTCGTACCGTCCTTGATGACTTCTCTTATTCTGCTGCTTAAGCTCTGCTTTGCCATATGCTTTATAGCCTGCTAGAATTTGATACCTTGAGATTTTTCAGAATAAAGATTTGCAAGACGTTCCCCATCCATTTCTGTGTTAAAATCCTTCAGAGATCACTGCAGAGCATGGATCCTAATAATGTACAGTAGCATCTAGAAAACGAAGTGAAAATGGAGATGGATGC

Explanation	CPC Score
noncoding (weak)	-0.266414

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0297200.1	5	5818361	A	T
Osa05LNT0297200.1	5	5819762	T	G
Osa05LNT0297200.1	5	5819869	C	T
Osa05LNT0297200.1	5	5820601	A	G
Osa05LNT0297200.1	5	5821343	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0297200.1	osa-miR2275a	Cleavage	4.0	15.932	1	22
Osa05LNT0297200.1	osa-miR2275b	Cleavage	4.0	15.932	1	22
Osa05LNT0297200.1	osa-miR2275d	Cleavage	4.0	15.932	1	22
Osa05LNT0297200.1	osa-miR2118l	Cleavage	4.5	15.212	1	22
Osa05LNT0297200.1	osa-miR5077	Cleavage	4.5	23.613	1	19
Osa05LNT0297200.1	osa-miR5495	Translation	3.5	21.7	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0297200.1	5	gnp5.1	Morphological trait	Panicle/flower	RM194	RM249
Osa05LNT0297200.1	5	snp5.1	Morphological trait	Panicle/flower	RM194	RM249
Osa05LNT0297200.1	5	An7-glum	Morphological trait	Panicle/flower	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus