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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0297300.2

GGCAGATTTCACGCAAACATAACAGGCAGAACATAGGCAAGCATCACAGAAATAAATTAGAACCATAGAAAAATATCATGTGAACATAAGTTGAAGATTCCCCGGTATTAATGAGAACATCACGAGGCAAGAACACAACATGAATGGATCTACAAAGTCGCTAGCTACACATAACTCAAGAGAAGCAGAATGAGCCTTAGTTCTTACAACCTCTGCTGGAAAGGTAATAGACACATCTTAGTGGCTGACTAACCAAATGTGTGCATTGACAACATAAATCAATCCCAGTCCTTTGGCATGATCATTATATGCCTTCAATCAAGACAGAGATCCAACCAATTGTTGGGATAGAGCAATCATTTGCATCCAAGCTCTGTCGCTAGCCCTACATCTCACCCTGATCCTGACCATGCGGAGTGCTTGGTGCTATCAGGTCCATGTATTGCTTCCATGATGTTCTGTAGCCTCTCTAATTCAGGCATGATATCCAAATAGTTTAAACAATGATTTTCAGAATGTAAAGAATTTAGCCGCTCCATCCTCCATCTTTCTGTAACCTGGTCCCCTTTCCATTAGCATATTATACAGTCTCCAGATATTAATTTCAGAGATACAAGTCAAATCTGGAAATGGCAGCACACAACACTCTTTTGGAAGGATGGACAACATGTCGATTCAATAGAGTTTGCAACACTATATTCGTTTGCTTTGTACAAAGACTGCACAGTGGCATTAGAATATCTAGATGACTCCTGGCAAATAAATCTTCACAATAATCTGTACCATCAAGCACAAACGGGACTGCAAGAGGTTCAACAAATTCAAAATATGTTCTCCCCCCAACCAAGAAACTTCTGACCAAAGAGAACTAATTTACCCTGATACTAAAATCTCTAATTCTAATGCATATCAACTATGAACATACCATGGTTCTTTGTGGAAAGTTGTAGAGCCACAGATGGAAACATGGAGTTGCTTTACTGACCTCTCGTTTACGAAGCACACTGATGTAGATATGGCCGAGCGGAGTCGCTTGCCTCAGCCACAGTGGCGTCCTAGGAGGAGTAGGCGGGGGTCACAAACGGAGCTACGACTTCGTGTATAGCGTTCCACCTGGAGCAGAGGATGGAGACGGCCATCAAAGGTGGGGACGAAGGCAGGTGCTCCTCGATGGGGATGTGCCCGCGGCGGCCTCGGCTTGGATGGGGGCGTGGTGCGGCTACGTGGGGCTGGATGGGGCATTGGGCGGCACGGCGGTGGGGGCCTGGTTAGCGCGCAGCGCGGCGGCGGGGGGCTCGATGGTTTGCGGCGCGGCGGCGCGCGGGGGCGGGGGGACTAGGAAGCGCGTCGATGGGGATGAGTGGTGGACGCCAGGATTGGGGATTGTTTTGTGACCTAGCCACCCAAGAGGTTTGGAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0417671
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0297300.2 osa-miR812r Cleavage 4.5 20.847 1 24
Osa05LNT0297300.2 osa-miR812t Cleavage 4.0 13.299 1 24
Osa05LNT0297300.2 osa-miR812u Cleavage 4.0 13.299 1 24
Osa05LNT0297300.2 osa-miR393a Translation 4.5 12.813 1 21
Osa05LNT0297300.2 osa-miR393b-5p Translation 4.5 12.813 1 22
Osa05LNT0297300.2 osa-miR812n-3p Cleavage 4.0 13.299 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0297300.2 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0297300.2 5 An7-glum Morphological trait Panicle/flower nan nan
Osa05LNT0297300.2 5 gnp5.1 Morphological trait Panicle/flower RM194 RM249
Osa05LNT0297300.2 5 snp5.1 Morphological trait Panicle/flower RM194 RM249
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus