>Osa05LNT0298100.2

GCAGCCGCTGCTCCTCTTCGGTTGCTCCACGGAGCCGTCGCCAACTGAGGGGATGATGGCCGGACGGCGAACTCACCGAGGCACGGCTGTTGGAGCGAACTAATCCGGAGGGGGTCAGGACTATTTTGCGCCGCCGCGGAGGCGGCGGCGCTAGAGGCAGGTCGAGCGGAGGCGACAGCGTCGGGCGACGGGGTGGTGCAAACGGTGGGGGCCGCCCGGCTCGAGCGACAGTGGCGCCGAAGGCGGTTTGAGCGGAGGCGACGACGCCGGGTGACGAGGCAGCCCAAACGGCGGCGGCGCCAGAGGTGGGTCAAACGGAGGCGACGGCGCTGGGCGCCGCGGAGGCCCGAGTGGAGGGCGGCGACGACAATGCGTGGCGGGCCTTCCTCCGCGCTGCCCCCCCTCGCTGGCTGCCGGCTCCCGAAGCTCCGCCTTCACCGCTCTGTTCCTCCCCAGCTCCGCCGCTCTCCCTCCCCATCTGCAGCTCGACGGCACCGGCGGCGGCTTGACGACGGCCGCTCCGTGCCCCTCCTCGCCAGATCCGGCCTTAAGGTCGCCGGATCTGGCCTTGGGAGGCGGTGGCGGCGGTGGCGGCTTGAAGGCGGCAGCAGCAGATCGAAGGCTGCGGCAGCGGCTCGACTGCGGGAGCAGCAGCTCGAAGGCGGCGGCGGCGGCTCGACTGCAGGAACGGCTCGACGACAGCCAGCCCGCGCCCCCTCTACAGTGCAGTAGAGGTCCCATCGATCGGTAACATCGATTCACTGATTCTTCCACATCTCTCCCTTGCGCCGCTTCGTCGCCCACATTCACTGATTCTTGGAAGCACAAACGAAAGGATCACATATGTACGTTACTACCTTTTCCTGCAAATACATATACACCACTTGGATATACATACCCATTCTGCCTTGCTTTACATGTTAATTAACTTGATTGAGCAAATGTTTGTTGCATTGATCGGCCTGTATCTCAAAGTACAATGAGTAAGTGACTGAAGGTAATTCATTAGCCTTTTATGTCTATATATGATCATAGAATGTATGCAGGGTGCATCAGACAAGCAAAATTATATGGCAAGTGATGGCACATTTCTTAGGGAAGGATTTATGAGTTTAATGTCAAAATCCTCTCTATCAGTTGCTTATGCAGCTAAAAATAGGGAAACAACCTATTTATATTCATAGGATACTCTATGAGTTCAACATCAAAGTTTCTTATAGGATACTCTATGAGTTCAACATCAAAATTATTTATATTGACATGTTAATTTATTATATTCTAAATCCATATGTTATTGAGATGTGTTCTCCAATTGATCTGAATGCAGAGTATCCTATCATAATATTAACAATGTTGGACCATACTTTTGGTGGGTGCTGCATGCAGTTATTATTATCAAAGCCATGAAAGGTTCAAGGCTTCCAGCTGGTTGGCAATTGCTCTTCAGGGTTTCTCTACCTGTTAACTGTTATTGCCTGATATTATTTCAGTTTTTTGGGCATGGGCACATGGCAGATACCACAATGTGAGGCAAACATTGGACCTTAGCTAACATAAATGAATATGTGATGCCACTTTCACTGATGCTTCTATGACCACTAGTCCGGTGTGGGATATGCATGCTCTTCATTACTGTATATGGCATGCTCTTCATCAAGGATTGGCTATAAAATCGTCAGTTCTGGGTCATGGAACAGTAAACCTTAATTTCTATTTGTTTTTGCTAATGGCCAATCTGTATAGATTAATTGTAAAACATACACAATATGAGTTGCCACTGTGGTTAGGGTTGCGATCTGCGGTTAGGGTTTGGGTATGGAATAGAGCAAGTGTGATGGCCAATGTGCATGACAGAGTCAGCTCCACTAACCAATGTCTCTAGATATGGTTCTACTCTGTGATCTCCCCCATCATCTCCGTCATGGATTAGGTCTAAGCTTGATTTAGGTGTGTGGCTGTCCAGCCATCTGCGCTCCTCCAATGGCATGCTGCTGGATATGCAGCCATCTCCAGCTTGGTTATTCTCTGCTGAAAAAAAATTAATCCCTCCTATCACATCTAACATTTGCTTCGACCCATGACAATGCTTGGTTTGCATTGTATTGCTCAGAAGCTATTTTCCAGTCATCAAAATCTCATTTGGATAAGCAGCTGTGTTCTGCTATATATTTTTTTTGTCCACTGACTCTGTGAACAACCCCGCCAATTATACTAAAACCAAACAAAGGTACATGAAGAACAATCCGCCTGCAAAATCATTTCTATCAAACACATTCTTCACTTTTTATTCAAGAGCTAATAGACAAACCTTTCTAAGACGTATCGTGTCTTGATGCATCTATTTACATGTGTCCTGACCGGTTTCTTTACTTCCAGAAAACAATCCTTTGCATAATAATATTTGTACAGATTCCATTGGAAACTATCCTTTTCAGAAAACACTACTTTTCATTAGCCATGTTATTTCCCTTTTGCCGACCTGACAGTAATAGAAGGAAAAACAGTTGTAGTTTCATTATTTCAAACTCAATCGCACGTATGCAGCTATATATATGGGCTATATATATGGGCTATGGTTTAAGTAGGTGGACCTACTCTTGCTTCAATCTTTCTTTGTGGTATAGCATTTGAGAAACATTAGTTAGAATGTTGCATAAGTGTAGAATTGAAGAACTGGTGTACCTTCCGGTTTCATGAAACATTACTGTTGCCTACG

Explanation	CPC Score
noncoding (weak)	-0.852878

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0298100.2	5	7062027	C	T
Osa05LNT0298100.2	5	7063138	T	C
Osa05LNT0298100.2	5	7063238	C	A
Osa05LNT0298100.2	5	7064915	A	G
Osa05LNT0298100.2	5	7063849	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0298100.2	osa-miR5541	Cleavage	4.0	13.217	1	21
Osa05LNT0298100.2	osa-miR5544	Cleavage	5.0	17.675	1	22
Osa05LNT0298100.2	osa-miR5814	Cleavage	3.5	14.464	1	24
Osa05LNT0298100.2	osa-miR5820	Translation	4.5	17.227	1	21
Osa05LNT0298100.2	osa-miR159a.2	Cleavage	5.0	22.775	1	21
Osa05LNT0298100.2	osa-miR1852	Translation	3.0	14.509	1	21
Osa05LNT0298100.2	osa-miR2092-3p	Translation	4.5	23.791	1	22
Osa05LNT0298100.2	osa-miR2863b	Cleavage	5.0	19.937	1	21
Osa05LNT0298100.2	osa-miR5486	Cleavage	3.5	22.385	1	21
Osa05LNT0298100.2	osa-miR5517	Cleavage	4.5	15.296	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0298100.2	5	An7-glum	Morphological trait	Panicle/flower	nan	nan
Osa05LNT0298100.2	5	gnp5.1	Morphological trait	Panicle/flower	RM194	RM249
Osa05LNT0298100.2	5	snp5.1	Morphological trait	Panicle/flower	RM194	RM249
Osa05LNT0298100.2	5	QKw5	Morphological trait	Seed	RG182	RG13

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus