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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0298200.1

ATGACTCGATTGCAATCATGTGCCCTTGTAGGATGAAGGGGTGCGTGGTTGAGGCTTGCACACAGAACGGTTGATGTGAGGGATGTATGGATTTGAGGAGAGGCCGGATTGCAAGAGGCCGGCATGGCGCTAGGGCTCCCAGCGCATCCTCCATCACGCGATACCTGCAGCCGCACCTGGCTAGGGCTACAGGCGCGCGGCGCTGCGGCGTGGCTGCCGTGTGGGGGATGGGGGGAGCAGTGCGACGTGGGGAGGAGAAGCGCGCGATGGGGGGAACCGGCGCGGCGGGGG

Coding Potentia
Explanation CPC Score
noncoding -1.52359
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0298200.1 5 7231803 G A
Osa05LNT0298200.1 5 7231864 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0298200.1 osa-miR528-3p Translation 4.5 23.827 1 21
Osa05LNT0298200.1 osa-miR2097-3p Cleavage 2.5 18.539 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0298200.1 5 An7-glum Morphological trait Panicle/flower nan nan
Osa05LNT0298200.1 5 gnp5.1 Morphological trait Panicle/flower RM194 RM249
Osa05LNT0298200.1 5 snp5.1 Morphological trait Panicle/flower RM194 RM249
Osa05LNT0298200.1 5 QKw5 Morphological trait Seed RG182 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus