>Osa05LNT0299300.1

TTTAGTATCAACAGCAAAATATATTCTTCTATAACTTCATATAATTTGCATAACAAATATTCTAAAAGAATACAGCAAAACACAATGGTATAAGGTATACACAATTCAGGTGCTATACTGCTATCAGCCTATCTCTCCAGGAAATGGGTTTGAGAACAACAACAGAACATCAGTCCATCAATACTTAGTTCATCAATCATCACAGAACAGCAACTTCTACTCTTGCCACTGCACCCACATTTGTGGTAGGATCTCCTACATTTGCAAGGGTTGGTTGTGATGCTGGCAAAGCTACAATGCCCGCATTGCATACACTTGCACTGCTGCTACTTGCATTTGATGATTCCATCACAAATCTGCTGGTTGCTCAGTTGCTGCCGCTGGGCTGCTGGCTACTGCGAGGCGAGGAGTCGTCGGCGTTGGTGGCGGTGAGGAAGAGTCGCCAGTGGGGCTTGAGGTGTCATCGGTGGTGGTGGCTGTCGCGTCGTCGTCGGTGGTGGTGGCGGCGGTGAAACGGCGAGACGTGGCGGGACGGCGTCGTGAGATAACGGGGACCGAGCAGGCCGGCGGAGGTGCGAGATGGTGGCGGCGGCCAGCGGCGAAACGGCGAAGAGCGAGGGCGGCGCGAGATGGTGGGGGCGAGGATAGGACGGCGGACCAGGTGGCGAGCGGTGGCGCGGGCGGTGGGCGCGGGGGCGCGCGATGCCGCGATCTGGATGCACCACAGCCGCCGCTCCGCCGCCGGCTCGCGTTTGCGTCTGTCTGTCTCTC

Explanation	CPC Score
noncoding (weak)	-0.943106

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0299300.1	5	8579932	C	A
Osa05LNT0299300.1	5	8579510	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0299300.1	osa-miR528-3p	Cleavage	4.5	16.809	1	21
Osa05LNT0299300.1	osa-miR1428a-5p	Translation	5.0	23.424	1	21
Osa05LNT0299300.1	osa-miR2928	Translation	4.5	9.625	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0299300.1	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0299300.1	5	yl(t)	Morphological trait	Shoot/Seedling	nan	nan
Osa05LNT0299300.1	5	qTHJ-5	Morphological trait	Seed	RM289	RM249
Osa05LNT0299300.1	5	gnp5.1	Morphological trait	Panicle/flower	RM194	RM249
Osa05LNT0299300.1	5	nt5.1	Morphological trait	Culm/leaf	RM169	RM249
Osa05LNT0299300.1	5	snp5.1	Morphological trait	Panicle/flower	RM194	RM249

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus