© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa05LNT0299400.1
AAAAAGGGAAATACCTAACATTAATTTAAACTTATTTTGGTAGACCTGTTTTTAAACAAAATAACAAGCATGCCCGCGCATTCACGCGGGCTACCTTTCCAGTTTGCTTTCTAGTTTGTAGTAAGTACTTCTTCCCTTGATGAAATTTGGTCTGCTTTCTTAACCGGCTGGCGAAAAAAATAATCTATCACCATAGGCCAAGCAAGTATTGCCATCCAGCCTGCCAACCGTATTGAGCACCCTGTCCACACATCATCCGCTGTCACCAAAACGCCCCTGCTGAATTGAATTGCTGATGATATCATCGGGTGTGTCCAACGGCTCCAGCACATGAACTGCACCATCGCTCATGCCGACTGCAAACTGGTTAGGCTTCCAGGGATGCGCAGCGACAACCATGGGATACACAATTTCACCACCGCTAGAAACTGAAGATGGTATATAGGCAGAAGGTGCAATCCTGCACTGTAACATGAGAGATTCCACTTGAAATATTCCAATTGCACCATCACAGAATCCAGCGTAGATCAATAAGCCATCCGATGAGTATACTGCACTCGAAACTGGAGCAGAGAGTGGATCACTTGGGAACCATGAGCACAAGCATTCTAGCTCCTCATCGTAGATCGCCAATTGGCTCTCATGAACTACTAAAAGGCGCTTTTGGTCATAGTGAAACTGCACCATTATATCACCAACTAAAGCTCCAGAATGATTAGATGGAGGTTGGATATATCTGGATTTCTTCTTCGCCCAATCTTCCATACTCCAAACACATAGCTGAGAATCAGCACCTGAAGATACAAGCACATTCATTGATAGCGAGAATACCAGTCCAGTTATCTTTTTCTGATGGCCCTTGAGCACCCATTTAACCTCGTCAACACGGATATTGTAGAGTAGAATCGAAGAGTCATCCGTTCCAATAGCTATGATGTTATTGTCATGCGGGTGGAATGCGAGGAAAGTTGCAGAGGGTGGAGGTGCTATGAAAGTAGTCATGGTCTTGAAATTTAACATGTTGAACAACGAAACTTTGCCACCAGATGCAGAAATTAGATAGCAGTCATTTTTGGATAGTAGACTGCAGGCAGCTGCTTCTTCAGGGTTGCCATTAGCAGTGTCATTCATTAGAATGTCACTTTCCGGTTGCCACACTTGAGGTGGGACAGATGTGGTGGACATGCCAGCAGGATTCTTGTCATTGCTCTCCCATTTCCACAGCTTATGAACAGCATTTGAGCTGAGAGCTAAAAGTCCCTTCCCACTTTTTCTATAAAGCAGACAGATAACTTTGCTTGAAGATGCTTCTGTAACTGGCATACGCAGTGCTCGAATACGGCCAGAGCTAACAATGTTCGCCTTCCAGGCCTCATTTACCAACTCCGGGGTTCTGCTCACATGCATATATGCCTGCATTTTCAATACAATTAGCAAATAATATTGAACAGCAAACGAACAAGAAAGTGCAGCAAACTCAGCTGGCCACTCATGAGTTCCTGGCTATAACTACAGTACACACATTCCAAATGGAACCAAGGGCATTCACAATCAGGGGCTGCATGGTAAAAAAAACAGTGGTTATTTTTCCTCTTTCTCCCAGTTTCTTCATCCAACGGCCAACCAAGCTCAACAGCAGCAACGGTCTTCCTGTGGCAGGACACGGCAGTAGATGGGTGTCGAAGCATCTCCACGTCATGAAGAAATCTCTTGGTAGGGTGAGAGCACAGCTTGTTCGTCTTGCCATTTGGTTTGAACAGTTGGGTGTTTGGGATGGACCGCAGCTGAGTTCATCAATGCAGCAGCCACTTCCTCCACCTCTGACAGACGGGCATCTCCACATTTCAGTACTATGGTGACTTTCTGGAGCGAACTTCTTCCAAGCTTCTCGAAGCTAAGCAGCTTGTCAAAACCAAGCTGGGTTGCATCTTTCAGGAACCGCATATGGACAGCAAACTCGAGGAATTCAAGACTTGGCATGATAATAGATGCTAAGCTTCTATTGTCTGTGATGTTGCACTTGCTGCCGTGCAGATCAAACCAGATAGATGTACCAAGTATCCTTAAGATTCTCAACTTCCGAAAGTAGCCAACATCTTCAGTATGAATCTTTATGCTAACCAATTCGGTCTCATGCAAACGCAGCACAAGGCAGCGGAGCTCTGGCAACCTCGCAAGGGTTTCCATGTCCTGCTCTTTCACAATTAGCACAACCACATCCAGACAGGAGAGGTTCGGAGCAAGCGATGATTTAATCCATGCTGGCAGTCCAGAGAACACAAAGCAATTCAGACACAGGTATCGGAGATGCAGGCAGGAGACAGATCTTGCACTGCTTGTCACTCTCCTTGTCACTAGGGGTGGGCCCTCAATGTGCAGGTCCCGGATATTGTGCAGCTTGCTTAGGGATTCCAACAAAGCTCTCTCCATGCTCTCATTCAAATCCTCAAAATAAGTCCGGAGCACCCTTAGTTCCCTCAGTAGGCCCAGCTCATTCACAAACTTCATCGTAGACTTCGTAGTATCATCAACAGCAGCAGCATCATCATCATCATCAACAGAAGCAGCATCGTCATCATAAACAGCAGCAGCAGGCTCTATCCAAAGCTCTTGCAATGAGGTCAACTTACCGATCAAACCAATCTTCACCATTATTTCCCAATCAGCTCGTAGGCAAACAAGTTGTGTCAGCAGTCCCACCTCCTCTGGCAGCTCCTTTATGCGACTTCCCCTTAAATCCAGTGTCTGCAGAAACTTGAGATACCTTACTTCCCTGGGCAGCTTAGTGATATATGTATCTACTAACCCGAGGTACCTCAGGTGAAGTAAACTCCCAAGATGGCTTGGCATAGTTTTGTCCCTATCTTCCAAAACATTAGGCGTCTCACTTTCTGCACAGTTTATCACATCTAATACACGTAAAACCGGAGTGTGTAGGCATAATGAACCGAAGCACTGACTGGCAATAAGGGATCTCACATTCTTCAGAGTGATATTAGCTAGCTGACCATCCTTGTGCACTAGAACACGCTGCAGGGCTAACCTGCGAGCAATGCTCCCCGGAAGTTTCTGTCGCTCATCACCATTCAATACAGTGACAAAATTTTCTTCACTCGATAATGAGTGGATCATATCAAGAACCATATCATGAACGCAGCAACCATCTACATACCCTTCATGTTTTGTCTCCACTGGCTGGATCATGCTTCTATTTATCAACTCATTGAAGCACCTCTCCCCGAGCTCAAATAATCCTAACCCTGCTGCTAGTTCCTCATGGATGAAACCTTCAGCTATCCACTTCCATATCAAACTATTTTTCTCTATCACATGATCTTCGGGAAATACACATAGATACAATAAGCAATCTTTTAAATGTGAAGACAGATCATAGTAGCTAAAAGACAATATCCTTCTAGTATTACCTACATCATCATTGTCTTCATGCCCAAAACCGACAGAGTTGTAGACCTCAGACCAGTCCTCCCCTGGTTTACTGGCCAACAAACTAGCTATTGTAATGATAGCTAATGGTACACCACCACATTTCTTCAAAATTTTTTCACATGCCTTAGCTGATGGATTATCGAAATACTTCCATTCACCATCAACTATTCTTGCATACAATAATTTTTCAGAGTTATCACGAGAAAGTGGCTGAATTTTGTAAGCTTCACCAGCATGTGTGGCAACTTCAGAAATACGAGTAGTTATGACAAGTCTACTTCCACAATCACTTTCTTGCAGAGCACATCTGATTAATTTCCATGACTCCTTGTCCCATATATCATCAATAACAATGAAACACCTCTTCTCCTTGACGAATTCCTTGAGTTCGTCCATGAGCTGCTTTTCATCCAACACCATCATATTCGGATTCGTGTACTTTTCCTTGTCAAGATCAATGAGAATGTCTCTAAAGACTTTCTTCATGTCAGGATTCCGACCCACTGGAACAAAAGCTCCGCATTCGAAATGCGGTTCAACCTGGTCATCGAATGCTTTATTCATGTCAGGATTCTGGTCGACTGGAACAGAAGCCCTGCACTTGAAATGCGGTTTGAAGTGGTCATAGACAGCTTTGGCAAGAGTGGTCTTGCCGAGTCCTCCAAATCCAACGACAGAGATGACTTTCATCTTCTTGTCGGACACATCAACATCACCCCCCAGGGATAGCTTGTTTATGAGATCGTCCCTTGGCCCGTCAATGCCAACAAGCTCTGTTGCCCTTTTGTACAGATTCTGGAGACGAGGATCGATGGTCGTTGCCGCTAGAGACTTGAGGACAACGCTGTCGACTGTGTACTTGACATGCCTTGCTTTCACCTGCTCGAACTTCTTGTTAATGTCTTGGATCAGGTTAGAGATCTTACGGCGAGCCTTGCTCTTCTTGAACAGCTTGCCTAACTTCTTCCGGAGGCGCAGGAGCATGTGTGGATCGGTGGGGTCAGGGCCATCGTCGTGCACCAAGAATGTGTCGACGATGTCCTCCATTTCGTAGGATGCCTCCCTGACATCGCGCGCCCAAAGCTTGACCAGCTCATCGACCTGCTCCGATGGCACATCGCCGATCTTGCGGAGGACGGCGTGCACGACATCGAGCTCCCGTGAGAGACTTGATCTTCTCCCTCACGCCCGTTTGCAGGCCGTACTCTTTCTCGAGCAGCTGAAGCAGCTTGGGCAGCAGGCTCCTCATCGCCCCCGTCGCCAGCTCCATGCTTGCAAACTGGGGGTCGGGAACAAGCCTGTCGTAGACAGCAAGGAAGGCCCGCCCGCCCCAGATCCGCCGCCTCCTCTTGGCCTGAAGCAGGAGGGACGCGCAGCTCTGCTGTCCCTGCCGCTCGCCGGCCAGATC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa05LNT0299400.1 | 5 | 8527172 | G | A |
| Osa05LNT0299400.1 | 5 | 8529295 | C | T |
| Osa05LNT0299400.1 | 5 | 8529296 | A | T |
| Osa05LNT0299400.1 | 5 | 8526648 | G | A |
| Osa05LNT0299400.1 | 5 | 8526720 | C | T |
| Osa05LNT0299400.1 | 5 | 8526919 | G | A |
| Osa05LNT0299400.1 | 5 | 8527208 | G | T |
| Osa05LNT0299400.1 | 5 | 8527242 | C | T |
| Osa05LNT0299400.1 | 5 | 8527736 | C | T |
| Osa05LNT0299400.1 | 5 | 8528263 | A | G |
| Osa05LNT0299400.1 | 5 | 8529439 | A | C |
| Osa05LNT0299400.1 | 5 | 8529558 | T | C |
| Osa05LNT0299400.1 | 5 | 8529763 | A | T |
| Osa05LNT0299400.1 | 5 | 8530962 | G | T |
| Osa05LNT0299400.1 | 5 | 8531250 | G | A |
| Osa05LNT0299400.1 | 5 | 8531964 | T | G |
| Osa05LNT0299400.1 | 5 | 8531967 | G | T |
| Osa05LNT0299400.1 | 5 | 8531980 | T | C |
| Osa05LNT0299400.1 | 5 | 8532075 | C | A |
| Osa05LNT0299400.1 | 5 | 8532855 | A | T |
| Osa05LNT0299400.1 | 5 | 8532924 | A | G |
| Osa05LNT0299400.1 | 5 | 8533090 | C | T |
| Osa05LNT0299400.1 | 5 | 8533389 | T | C |
| Osa05LNT0299400.1 | 5 | 8533953 | C | T |
| Osa05LNT0299400.1 | 5 | 8535078 | T | G |
| Osa05LNT0299400.1 | 5 | 8534638 | C | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa05LNT0299400.1 | osa-miR5536 | Cleavage | 4.0 | 23.543 | 1 | 22 |
| Osa05LNT0299400.1 | osa-miR5815 | Cleavage | 4.5 | 24.082 | 1 | 24 |
| Osa05LNT0299400.1 | osa-miR5837.2 | Translation | 5.0 | 22.562 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR5837.2 | Cleavage | 4.5 | 23.853 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR1437b-5p | Translation | 4.5 | 17.923 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR159c | Cleavage | 4.0 | 15.134 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR159d | Cleavage | 4.0 | 15.134 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR159e | Cleavage | 4.0 | 15.134 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR159f | Cleavage | 4.0 | 15.134 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR172a | Translation | 4.0 | 11.077 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR172b | Translation | 4.5 | 11.077 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR172d-3p | Translation | 4.0 | 11.077 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR1426 | Cleavage | 4.0 | 20.058 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR1426 | Translation | 4.0 | 11.077 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR1852 | Cleavage | 5.0 | 14.932 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR1861n | Translation | 4.0 | 14.607 | 1 | 22 |
| Osa05LNT0299400.1 | osa-miR2100-5p | Cleavage | 5.0 | 17.132 | 1 | 22 |
| Osa05LNT0299400.1 | osa-miR2871a-3p | Translation | 3.5 | 14.849 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR2871b | Translation | 3.5 | 14.849 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR5505 | Cleavage | 4.5 | 7.91 | 1 | 22 |
| Osa05LNT0299400.1 | osa-miR5508 | Translation | 4.5 | 12.12 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR167e-3p | Cleavage | 5.0 | 19.941 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR167i-3p | Cleavage | 5.0 | 19.941 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR5338 | Translation | 4.0 | 15.109 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR167e-3p | Translation | 5.0 | 14.7 | 1 | 21 |
| Osa05LNT0299400.1 | osa-miR167i-3p | Translation | 5.0 | 14.7 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa05LNT0299400.1 | 5 | yl(t) | Morphological trait | Shoot/Seedling | nan | nan |
| Osa05LNT0299400.1 | 5 | qTHJ-5 | Morphological trait | Seed | RM289 | RM249 |
| Osa05LNT0299400.1 | 5 | gnp5.1 | Morphological trait | Panicle/flower | RM194 | RM249 |
| Osa05LNT0299400.1 | 5 | nt5.1 | Morphological trait | Culm/leaf | RM169 | RM249 |
| Osa05LNT0299400.1 | 5 | snp5.1 | Morphological trait | Panicle/flower | RM194 | RM249 |
| Osa05LNT0299400.1 | 5 | QKw5 | Morphological trait | Seed | RG182 | RG13 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)