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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0299600.3

ATTGAATAAAAGTTCTCTAATGGAAGGAATAGAGGGGTATTTTTATTAGGAACATCCCTCCTAGCTTAGGTGTGAACATAAGAAGCCACGTTCTGGTGGTCAAGGCTAACATAAATGAGAAGGCAAAGTGTTTTTCTCGGGTTCGCGCATAGCCCTTCAGCTCCTGCGCAGCCTTCAGTAAAAATGCTATAACTTCTTATTGGATAAAGATATTGAGGTGGGATTTGATGCGTTGGAAACTAGACTTGTCCCTCTTTCCTGCCCAGCCTTCATTAAAAATGCTATAACTTCTTATTGGATAAAGATATTGAGGTAGGATTTGATGCGTTGGAAACTAGACTTGTCCCTCTTTCCAACAATGTATGCCATGCAATCCGTCACTTGATTGGCTAGGTCGCACAAGCCTTGGAAGTTGAGTCTTTACAACGTAAACCATCTTCTTGTTAGCATAGACAGCTGCTGGTTGGGCATGGGTTGATTCCTCCTCGGCATAACCCTTGTCGTCCTCAACGTAACTCATCCTTCTTGACGTAGTGATGATATCCTCAGGTGTAAACCTTAGCAATACAAGGATAAAGCATTTAGGTAGTATAAAATTCTCACTAAAATTTGGGTTAAGATGAGTAAATAGTGAGTTCACCTCTTGATGTATTTTCCTAGCACGGTTGCACGTAATTAGACCAAGATATGTTTGATCGTTCATGCTGAGACATAATCCATTAACTTGGTTTACATCAAGTGTAGATCACGCAATCTATTGCGAGGAAGCATGCGCATGACAGCTTTGCGAATTACTTCAGTTGGGTCTTTTTCCATGTGGTCCTTGAGTCTTCATTCCTTCAAATGGCCAATATGCCTATTTGAAAAAGCACACAAACAGGCAATTGTAAATAATAAAACCAAAAGGTATTCAACAGTATTAGCTAGAAATATACTAGTAGATCTTATCGGTCATTTTTCTTCCTGCAACACTGATATCTTTTGCATTAAGCACAACGCACATGTCTCTATTTTCCACATGTGGTGCATAAGTTGGCTTGTCCTTGCCCTGAAGCACAACAGCTATTTGGGACGCCAACTGTCCAAGGACCTGGCCCTTTGCGTCAAATACACGCCATCTCAATCCATCTAAATTGATTCTTCTCAAGCCTGCAAGTGCTTTCTGTTGTATAATTGTATACGGTGGGATCAGAGGATGAGGAAGCAGCGCCACCGGTGGCATCTGGCAGGGACTCCGGGGACGAGAGGAAGCGGGAGAGGGGGCGCGGAGGTGGTAGCGCTCTGGTTAAGGGTCAAAGTGGAGATGGCGGTGGTGGCGGCGGCGGCGGGAGAGGCCTGTGGATGGAGGGGCGAAGGAGGAGGAGAGCACGAGCTCCCGAACGCCGCCACCTCTCCTCATCATCGTCGGCGGCGGCGGCGGCTTGGTAGCTGTAACGTGTGGAGGCAGAGTCATCACTGGTCGAGTCGAGATGGGAGGC

Coding Potentia
Explanation CPC Score
noncoding -1.14237
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0299600.3 osa-miR2118h Translation 5.0 19.205 1 22
Osa05LNT0299600.3 osa-miR2118k Translation 5.0 19.205 1 22
Osa05LNT0299600.3 osa-miR2924 Translation 5.0 22.438 1 21
Osa05LNT0299600.3 osa-miR5179 Cleavage 3.5 23.996 1 21
Osa05LNT0299600.3 osa-miR5160 Translation 5.0 13.22 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0299600.3 5 yl(t) Morphological trait Shoot/Seedling nan nan
Osa05LNT0299600.3 5 qTHJ-5 Morphological trait Seed RM289 RM249
Osa05LNT0299600.3 5 gnp5.1 Morphological trait Panicle/flower RM194 RM249
Osa05LNT0299600.3 5 nt5.1 Morphological trait Culm/leaf RM169 RM249
Osa05LNT0299600.3 5 snp5.1 Morphological trait Panicle/flower RM194 RM249
Osa05LNT0299600.3 5 QKw5 Morphological trait Seed RG182 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus