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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0300300.1

ATTTGATACTCTGTAATGTTCCCGACTCTGGCATTATTTACAGTATTGATAGTGCAATATTTGCTTATTCATTTATTATTTGCACCAGAACAGCAGCATCCAAATCACACATCAACACAGAAGAATGGATTGAAATGCATTGACATCCATGTTCAGTTAATCAATTTGATGACAATCTAATATGGAACAATTGAAATACCAATCTCAGAAACAGCTACAATTGAGATGAATTTGAGCATTACTTCCTCTACCAACAAGCTTGGGCAACCAGGAACTCTTGCAAACAGAAGAAAACATCATATGAACGGCACCATAGGCAGTTTGACCACTCCTCATAACATAGCAAATAAGCCGATTGACTAGGAAAACCTGAACAGCGCAGGTGAGTATCTGATGGAACTGGTGTACATCAGATCCCTCTAGCTGGTAGCAAAAAGAATATATTCATGGGACCTGCATGGCCATACCATTGTCTGGTACATTCAACACGGTTCTATTGTTGATTGCGCTCCGAGCACTCTAGCAGCAGTGGCAGGTAGGGAGGATGAGAGGCCAGCACTGGCCATGGGAATGTGGTGGTGGTGGTACCAAAGTGGAGCAAGAGGCAGGTCGCAGACTCAGACGGAGAAGTAGCCATCGCAGGGTGTCGGCGCCTCTTTTCATGTCTTGGCGTCGCAGGACAGCAATAGAGGCAACAGGCTCGTGTGGGGAACTGCAGGGACAGTGAGGATATGGTGCTGCACGGCTCCTTCGTACACTACCACCTCCACCAGGATGGCCGTTGCGGTCGCCGTCCCTGTCTCCTCAGCTGGCGTGCCCTCCTCCCTCACGGTAGAGATGCGCATCTCTGGGCGTGGTGGAGGGGAGCATTGACCGCCGAGGAGGTTTCGACCACCTCGCCGCCGGCAGCACCTTCAACTGCTAAAGTCAGAGGGCCGAGTAGCCGACAACGATACGAGGAGCACCCCCCAACTCTGATTAATCCTACTCCACCCCGAGGCACCGACAGGCACGAGTACAATTCCTCCCTCCCCATTCTCCATGCCTAGCCAACGATGCCGATGCGGATCTGGTGCGGCGAGGAGAGGAGAGGGTGAGACGATCGGAATCAAAGCCGGCGTCGACGAGCTGCAGGTTGCAGCCTACCGCGCGGAGGAGCCAAGGCGGCGGCGGCGGCGGCGCGTGGGAGAGGCTGAGAGGGATTAGGGTGCGAGTGCGACTGTGCGAGAG

Coding Potentia
Explanation CPC Score
noncoding -1.21146
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0300300.1 5 10268655 C A
Osa05LNT0300300.1 5 10269325 T G
Osa05LNT0300300.1 5 10269123 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0300300.1 osa-miR171c-5p Cleavage 4.5 16.124 1 21
Osa05LNT0300300.1 osa-miR530-5p Cleavage 5.0 11.096 1 20
Osa05LNT0300300.1 osa-miR2876-3p Cleavage 5.0 22.498 1 21
Osa05LNT0300300.1 osa-miR2926 Cleavage 5.0 24.063 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0300300.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
Osa05LNT0300300.1 5 qTHJ-5 Morphological trait Seed RM289 RM249
Osa05LNT0300300.1 5 gnp5.1 Morphological trait Panicle/flower RM194 RM249
Osa05LNT0300300.1 5 nt5.1 Morphological trait Culm/leaf RM169 RM249
Osa05LNT0300300.1 5 snp5.1 Morphological trait Panicle/flower RM194 RM249
Osa05LNT0300300.1 5 QKw5 Morphological trait Seed RG182 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus