>Osa05LNT0300700.2

GGATATTATATTTATTTTAGAAAAGTAAATTAGATTTATAATTGTACTTATAGAGGAACGGAGGGAGAGACTCCCTTCGTCACAAGAGTGTAATTCTACCATAAGTTTTCATAACTACAAAAGCATTTGTGCATGCGGTCAAAATATATTTTCACATGCAGTTGGACCAAACATCTGCGAAAATAGGAATTTTCCATCCAGGTGACACACCGACATGTGAAAATCAGTTTTCCTCATGTGGGTATTTATGTCGTCCGCATGCTGGATCCCGCACCCGCTGGTTACCCGAGCTCGCGGCCGCCTGGATCGGCCAGCCCATGCCCTCCGGGCAACGGAGAGAGGGAGGAGAGGCGACGGGATCAGCGCTGCCCAAGCTCACCGTAGCCGCTGCTCCTACCATTGCCATCGCCCGCCGGTGGTAGATCCGCCTAACCAGATAAGTGGGGTGATAATTCTGCAACCACCATTAAATCTAATTGTCATTGTCATTAAGGTGAGTCAGTGTAGGTGCTTTCAAGACTCATGTTGCTGTTGATCTGTGTCAATAGTTGGATTGTGCCACATTGAACAACAACAAAATTGAGTTTCGTGAACATAAATGGTAAAACAGCCCAAAAAATGGATAACAGCTTTATCAAATTCTATGGGAATATAATACTGACCAAGTGTAAATCTCACTCCAATGCCACAAACGGTTACATTTCTACAAAAATTTGATTGTTTTATACTCACTATGTGTATTCCGATTTCTTATTGCAAGCTATCATTGTCAGGCAATAACAAGCAGCCAAACTCATAAGAAACCATCTGGAAAATCTTCGTATACAGTAAGCAATGTCAGAAATTTTTTTCCAAATGGTAAATTTCAAAAACATGGTCCGCCCTTGAAAAAAAATCAGAAACATGGTTGTCCAAGGAAATAAAATTCAGGTAGTGCAATTCAGCTTAACTGCCATTTATAATGGCCATGATGAAAGGATAATTCATCAGCTGCAAAGATTGTATCAATTTACACACTTCATGGCCACACTGTTCTTCCTCGTGAGATTATACACTGTTCATCGTTTGAGAGATGAGATACATAACTGGATGAAATTGACATAAGAGAAGGTTTTCATGACTCACCTTGGAGAGAGCGGAGAGCAGGTCAATCATGATGGAGAGTGGCAGTGATGGGGAAGGTAGAATTTTGCTTTGGAATAAATTTATCTACCTTAATGAAATGAAACCAAATCAGCGAGAGAGTTTAAAAAATAAATTGTATATATCAGCAATAACCATATTTCTCTTCAGTTGTATATATCAACGTCAGGCCCTGCAATTTAGTAGCAATTGACTATTGATCCTAGAAAGCAATGTCAGAACTTTTTTCCAGATGGTCAATTTCAGAAACATGGTCCCCCTTCAAAAAATTTCTTTGTTCAGAGATCATAGTACAAAAGTTGAGTGCCTGTAGTTAATTGGACAGAAATGGTCCATCTACAATGAAAATGCAGAACAAGGGATAAATGGTAGGCAATAGTGTTATATTGACCATATGCATTTAAGATATTTTGTCACAACCTGACCATGTAAGTGAGGTGATAATTCTGCAACCACCATATAATAAATCGAATTGTCATTTTCATTAAGGTGAGTCAGTGTAGGCAGCGCCGCATGCAGTTCTTCTCCATCACCAATGAATTGCCTGCCCATGTCAATTCTAGGTGCTGCTTGAACTCTGTGTGAACAAGATTAGGAGTTCTCCAATCCCATCGTGGCCTGCAGCAGCTGCATGATGCAAAAGCTGCCTTTGGTGATTAGCTGGTGGATCTCGCCATCCAGGACCTTGCTCAGGCATGTGAACTGATGAAGCAGTCCGTGGGTGTCTCACAACTTGGCCTCCATGCCGCTCGGACACCACGGTGCCTGTCCTTCTCGAAGCAACGCCGCCGCTTTGTTTGCCCTGCAGGGGATGGGGCCGAATCGCCGGAGCCGGAGTGCCTGAGCTGTGGGGTCTCCTGCCCGGAAACAACGCCAAGGCGGCAAAGCAGAAAAGTGCCTCCACGCGGGCCGGACCAGCGGCGGTCTCCTTCCTCCGATGCAATGGCGGCGGAGCAGAGATTGCCAGCCCTAAGAGAACGGGAGATGTGAGGGACAATTTTGGTCAAGGCGTCGGCGGAGGCGGTGGGAAGCGGCGGGCGTGTAGGAGGCGGCGGCCTAGAGCGGCGGCGGCGATGCGGCCCGCTTCCCTCGGCAACGACGACGACGGCTCTGGCGGGAGGCGGCGGCCACAGGCGATCCGAGGTGGCGGCGGGGTAGGGGAGTCGTGAGCGCAGCCGCGCGAGCGGAGTGGCGGCGGTGGGCCCGCACGAGAGGCGCGGTGGCGGCGGCGGGCTGAAGCATGAGGGAATTTTTTTTTTCTTTTTCGCTGTGAACAATCGTATTTTTTAATCGCCGCTTTTCTCGAGGTGGGAT

Explanation	CPC Score
noncoding	-1.22959

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0300700.2	5	10722486	A	T
Osa05LNT0300700.2	5	10720494	G	A
Osa05LNT0300700.2	5	10720499	A	G
Osa05LNT0300700.2	5	10721171	C	T
Osa05LNT0300700.2	5	10721653	G	A
Osa05LNT0300700.2	5	10722325	C	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0300700.2	osa-miR319a-5p	Cleavage	5.0	18.112	1	21
Osa05LNT0300700.2	osa-miR1320-5p	Cleavage	5.0	11.864	1	21
Osa05LNT0300700.2	osa-miR2099-3p	Translation	4.0	22.164	1	20
Osa05LNT0300700.2	osa-miR2118b	Translation	5.0	16.613	1	22
Osa05LNT0300700.2	osa-miR2118n	Translation	5.0	16.613	1	22
Osa05LNT0300700.2	osa-miR5507	Cleavage	4.0	18.033	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0300700.2	5	qTHJ-5	Morphological trait	Seed	RM289	RM249
Osa05LNT0300700.2	5	gnp5.1	Morphological trait	Panicle/flower	RM194	RM249
Osa05LNT0300700.2	5	nt5.1	Morphological trait	Culm/leaf	RM169	RM249
Osa05LNT0300700.2	5	snp5.1	Morphological trait	Panicle/flower	RM194	RM249
Osa05LNT0300700.2	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0300700.2	5	yl(t)	Morphological trait	Shoot/Seedling	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus