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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0301000.1

GGTTAACAATAGGGAAATTTTATTAGGCAAAAGAAACTAGGAAATATCACATCTCTATTGATAGTATTTCAAGAAAAAAATCAATAAAATAGGAGTTTACATTTGCTAATCTGATGAGTCCTTCCAAAGCTAATGTGAGGGGCACCCTCAGGAGGCTGTAGCATTTCCTTGTCATAGTTGACTGACATGAGGTACAATCCATGAGGTGGTGCTGATAATGCCACCTTTGCTAGTTCCTTGCGGTCTCTTGCTGCGATGATTTTTGCGACGATGTCAGGTGGTAGTGCCTCCCTTCCAACTTGTAGCAACAAAGCTACCATGTTCCTAACTTGTCTGTACAGAAAGCCAGTGCCTTCAATCTCAAGCTGTAAGATAGCACCCATTTCAATAACATCAAAGCGCATTATCTTCTTTATGGGACTGCGTACACGATCATTGTGTACTGCATTAGCGAAAGATGTAAAGTCATGTGTTCCAACAAAATGCTTTGCAGCCTCCCGCATAGCTTGTGAATTAAGCTTATACGCACTATGGTATGCATAATGATTATGAAAGGGATCCATGACTGGTCCATTATAAATCTTGTAATGATAAATTTTGCTCCTTGTGGATGTCCGGGCATGAAATTCAGGCTTTGCTGCACTAATTTCCCTCACTCGAATCTCATGTGGAAGAAGCCCATTGATTGCAGAGTGCATGCTATCAAGACAATGGTAGGAAAAAGGCGTGGTGAAATGCGCCACCTGACCCCATGCATGAACACCTGTATCTGTTCTGCCAGCTCCAACCAAGCAGAGCTCCTTGCGATCCAGCTTTGTGATGCGTGTTAGCGCATTCTCAATACTACATTGTATGGTTGGAGGCGATGGTTGATACTGCCAACCTTTGAACTTGGTCCCGTCGTAGGCGATCACCATACGCCACTTGTACGACGCTCCCTCCGTCGTCTCCGCCCGCGCCTTGTCGGCGTCCTTCTCCCCCGGCGGCGGCACCGCGCAATGGCAGCCATCCCCGAGCGAGATACTATGTCCGCCGATAGCGGCGGCGGAAACGGCGGCGGCGCCGCGAGGAGGGGGAGAAACAAACCGGAGTGGTGCTAAACCCAGCATATCCAATTCTCCAGCCGATGCGTGGGGAGACACTGTCACACGGGCACACGGCACCAAGAGGGGGTACAGACAACATGTGCCGAAGGACCGCCCCG

Coding Potentia
Explanation CPC Score
noncoding -1.3421
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0301000.1 5 11650369 T C
Osa05LNT0301000.1 5 11650407 A G
Osa05LNT0301000.1 5 11651064 T C
Osa05LNT0301000.1 5 11651278 C T
Osa05LNT0301000.1 5 11651993 A G
Osa05LNT0301000.1 5 11652571 T G
Osa05LNT0301000.1 5 11655029 A C
Osa05LNT0301000.1 5 11655807 T C
Osa05LNT0301000.1 5 11654570 A G
Osa05LNT0301000.1 5 11651506 C T
Osa05LNT0301000.1 5 11654559 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0301000.1 osa-miR440 Translation 4.0 20.191 1 24
Osa05LNT0301000.1 osa-miR2864.1 Translation 3.5 24.017 1 21
Osa05LNT0301000.1 osa-miR5509 Translation 5.0 22.743 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0301000.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0301000.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
Osa05LNT0301000.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus