>Osa05LNT0301200.2

AGGGCTTCGAGCGCGTGAGGCGAGGCGGCGCCCCTTCCTCTCCCGGCGGCGGCGCGGCGCCCCTTCCTCTCGCGCTCCCATCGACCGCAGAGGCGGCGAGGCTCGGCTTCTTCTCGAACGGCGCCGCTCCACCGCCCTTCCCCACCGGCGCCGTCGAGGCTTCGATCCCCAATTCGCGTACTCGCACCGTCGCACGCGATGGCGGCACCCTCTCCTCCCATCCCGGTCTCCACGCCGGCGCCACGGCGACGCCTTTCCCCTTCTCCTGAATTCTACATCGGCGTGACGGCGATGCTTCCTTCTTCCCTCCTCCCCGCCAGCAGCGCCGCCTCTTCCTCCACCTGACGCCGGCTTCCATCTCGTTGGTTACGAACTCGCGCTGCCCCTTGCGCCCATGCCGTTGGCGGCGGTGACTTGGCTGTCGTCCCACTCAGCCTACCGCGTGTTCTGCTGCCCGACATGGCCACGCCATCGGCCGTCCCTGCTGGTATGAGCCAAACTGCAGTATGTCTTGTTTGCCTGTAATGTCAAAGCTGATGAGCTGATCTCTTGTTTGCCGTCAAAACTTGCTTGTTGATTGATTCGTTTTTGTCAATTTTGAAGTTTGTCATGTGCTAAGCACTGATGTATCGGGTAGCAAAAAAATTGATAATTTCAGTGTGTTTCTATTAACATCAGTGGTAATTAATTAAGCATCTCCAATCAAAAAATCAACAGATTATATTCTACTTACGTTCTTTCATTTGATTTGGCATGTGTACTCTCTTCTAGCAAAAATCTGATTTTTTTTTCATGGGTCAACCCGTGGTACCCACTGGCATTGTTGCATCCTAGGTGGGTTTCATGGGGCGAGTCTGGGTCGGCGCCGCCATCATCTCCTCTCCTCCTCCCTTTCCCGTCGCCGCAGCCGTCATCGTCGCGTCTCCTCACTATCGGAATCAGACGTCGGCCAGTCCCTGTCCCTCCTCGCCTCCATCCCCAATCCCCTCGCCCTCTTGCTCCTCCGCCAAGCCCCGCTCCTCCGTCGCGACCAGCGCATGCCACACCGGCGCCGCCTCGCCAAGCGCCACGACCTCCGTTCCGCGACGCCGCCACAACCCCAGGCGCCCAGCCTCCGCCGCCCACCGTCGATCCCTCGTCGTCGCTCCACCTCCACAGCAGATCCCCTCCCCGGAACCCCCTCCCCTTTCCCACACACCACTCCCTCCCATCGACGCACCTTGATGCACGTCTCCCCACCTTTTGCCCGGTCGCCCCCGGAACGGATGGATGGATGCCTCCACGCTGCCAGTCATCGAAGCGCCCTGAACACCTCCGTCATCGCATCTTGCCCGTCTCCTTCGCGATCAGCCGTCCCATCCGTAGTCGACGCCTGGAGAGGCTCTCCCATTGGTCCCGTAGATGGCTGCCTCTGATACATCACCTATGATCTTGGTCTTGTCGATGGCTGCCTCTGATACATCACCTATGATTTTGGGGTATGGAATAATTGATTTGTCTTGTCATGGTTAGGGATTAAGGTTTTTTTTTTTTTTTTTTTTACTTTGATTCCCTTCAGGCTAAGAAAGGAAGAAATTTGTACTTATTCAGTGTTTCAGTATGTTGTATGTAGAACTACAAATACAAATACAAGATATGGTTGATGATCTGTAATTCTTCTTCACTATATATTGTCTGTGTTGATCTTTTAGATTGCCCAATTTGGGATTATCAGAAAATGTTTCTAGATTATCAGAAAATGTCATGAAGCCTTATATGTTTCTAAATTATCAGAAAATTTCCTTCAAAAGAATATTATGAGAAAATGAAAGTGTTGTAAACATGTCTGCTTGTTTTCCATTGCCAGACAGACTCCATTTTGGATTTTATTAACCAATATAGTATGTATTGTCCTGGTTATTACAACAAATCACTTGTTGCTCTCAAGTGCGAGATTTAGCCATCAAAGCTAGATGGAGTAAAAAGATTTTGTTGTTTCCACCATCCTCTGCTTTTGGTAGATGGAGTAAAAAGATTTTGTTTTAAACCTTCTTGATGGTTAATAAAGCTGTTTTTTGGTGATCCATTAAGCTAGCAGCACTTACGGTTCCCATGGACTGAAGATGTGGATTAAGTCTTCCTGCTCGCTGACAACACAGGTCTGGCTTCCTCTCGGCCAATCTCCCCCAATCTCCATCTCCAAGGTAGCATCACTATTTTCCCTTTCCTTTTATTTTCTTGTGTGTTGGCTCCTAGCCTCCTACAGACCGCTGCGGAATCAAGAGGCCCTATGGCCGTGTATCTTATGTTTACTCGATTTCTGCTCAAGATGTTTCCTCTTTTATTTTTAGATTTTAGATTCCTGGTACCCTTACTGTTTTAGTTTTTTTCAAGATGAAATTTCTCTCTTTTATATGCTAACATAGGATTACTATAAATTGAATTCCTGACACATTAATAGTTTGTATTTACAAACTGTTCATGGCAAGGAAGTGACGGTGTAAAGTACAGTTGCAACCATATATTGACGAGACTGCGGCCATCTTGTTTGATTTCATTTCCTTTTTGTCTATTCATTCTTCAATGTCTGATCTAATAATTCAGAAAGATAGCTTTGCAACCCTGCATAGAATTTTCAAATTCATATGAATTCTAATTTTCCTTCCGGGGGTACTATGGCCGGTTCAAGAAGTGTCCCACAGAAAGGTGCATGTCCTTCACTGTTCAAGGTTCAAATGAATCCTCACGAAATGTAAAAACAGGTGACTTACGACATCATTGATTGGTGACCCTGTTAGATTATTTTTCTTTATTGATTATGAAGCTGTAGAAAGGAGGTTTTGCAGTACTAACATTGTATAGGATATTACTAACATTGTATAGGATATAATACCAGGGCCAAACATTTGGGTGGTTTGTATTAATGCTCTTCTTTTTCTAGCCAATCACTTCATTCAGTTTGACAATATGTATATCATTTTTTGTCCTTAACATTAGAATGGTAATGCTTTAATGCAGCCAACTTTTTTACAAAGTATTTTAAGCATAATTTCACCAAGATTGCCTTAATGAAATGATTGTCAGACATAGATGCACATGCTTTTTTCTTGCGTTATGAAATGTCAGATAAATTTATTTCAAGTTACTACTTGCAAAGTTGTCAAATCTTAGTCGAGCAAAAGTCAGCAGTACACAATCTGCACATATACGGTACCGTTCATTTTGAGCAATGTCTATACATGAAAGTCCTTTCTTAGCAGTCAATTCCATGGTCCCTGCAAGTGTACATTCTATTTGACAATGCCACGTTTATTATTATTTTGCATGCTTATGCAAGATATTATCAAGCTGATACTTCGCATTTTCTAGATTTATCAAGTTTTGTGTTAAATTTCTATCAAATATTGGTTATTTACAGGGTCAGGTTGTCTAAAACAATACATGATTTTTCTGATTGTGTCCACATTTTGGAGTTGTAGAAGTGCAGGGAAAGCTAGGCAAATCAGTTGAGAGACCGAGCAGCTGAGCGTTAGATGGATTTAGGGCACTACATGCCTTTGGCACTTCTTAAGCCATAGTCACAGTATTGATCAAGGAGCAGCCAAGCGGACTGTGGCTTAAGTTATCAACAACTGGCTAAGGGAGGGCCAGCGGCGCATGAGGCGGTCCACTGCTAGGTGCAACAAGCTCACAAGGAACAGGCGGCAAGGTCTATGCGTGGTGCGAGCTGCACGGCGAGCCACACAGTTTGCTCGAGTGGGCTGGTGCTGTGAGCTGCAGGGTGCGAGCTGTGGAAGGATGGATCCGCAGGATTATGAATCCTGAATATTGGTGATGGTCAAATATTCGATGTAATCAAATGATGTTCAGTTTCTCACAAAATCCATTGCTTTTTACATTTTGTATTTTTCTTCTATCAAACCAGATCAAGCTGTACAAGAAACAAAGTAAGGCAGATTTTTTTTTGTTCAGAAACTTCTTTGCAGCAACTTACAATGTCGATAGAAAGTTGTCTTGCTGAAACTTTTGTTGTTCTCGTTGGTAATGTATGAAAAAAAT

Explanation	CPC Score
noncoding	-1.13024

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0301200.2	5	12926752	A	G
Osa05LNT0301200.2	5	12926757	T	C
Osa05LNT0301200.2	5	12926797	T	C
Osa05LNT0301200.2	5	12927640	T	C
Osa05LNT0301200.2	5	12930544	G	T
Osa05LNT0301200.2	5	12929584	A	T
Osa05LNT0301200.2	5	12927956	A	G
Osa05LNT0301200.2	5	12927293	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0301200.2	osa-miR5530	Cleavage	4.5	13.449	1	21
Osa05LNT0301200.2	osa-miR5540	Cleavage	4.5	13.327	1	21
Osa05LNT0301200.2	osa-miR5815	Cleavage	3.5	14.778	1	24
Osa05LNT0301200.2	osa-miR5817	Translation	4.0	17.373	1	24
Osa05LNT0301200.2	osa-miR5819	Cleavage	4.0	20.735	1	21
Osa05LNT0301200.2	osa-miR167h-3p	Cleavage	5.0	15.011	1	21
Osa05LNT0301200.2	osa-miR169f.2	Cleavage	4.5	13.228	1	21
Osa05LNT0301200.2	osa-miR529b	Cleavage	4.0	10.381	1	21
Osa05LNT0301200.2	osa-miR1868	Cleavage	5.0	14.323	1	24
Osa05LNT0301200.2	osa-miR1320-5p	Cleavage	4.0	11.315	1	21
Osa05LNT0301200.2	osa-miR2102-3p	Cleavage	5.0	13.367	1	22
Osa05LNT0301200.2	osa-miR2121a	Translation	5.0	13.143	1	24
Osa05LNT0301200.2	osa-miR2121b	Translation	5.0	13.143	1	24
Osa05LNT0301200.2	osa-miR5082	Cleavage	4.5	19.54	1	24
Osa05LNT0301200.2	osa-miR5082	Cleavage	4.5	12.272	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0301200.2	5	yl(t)	Morphological trait	Shoot/Seedling	nan	nan
Osa05LNT0301200.2	5	qLTG-5	Resistance or Tolerance	Cold tolerance	RM249	RG13
Osa05LNT0301200.2	5	QKw5	Morphological trait	Seed	RG182	RG13

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus