>Osa05LNT0301400.2

GCACATCGCGGCGCCCCTATCCCGTCAGCCGCCGACCCGCGCACACACCCATCACGCCCCTTCCCTCCCGCTTCCCCCCTTCCCCGCTCCCCCGCCGACGGCAGCACCTCCACCTGCGCCACTGCCGGATCGACGGGAGCCGCCGATCGTCCTCCTCCGCCAAACACCAACCTCGCCGCACAGAGCCGCGTCCCCATCCCATCAGTCGTCAGGCCACCTGCGTGTTCCCCTTCCCCGTCGCCCGGGCCTCTCCATCGGTGATCTCCTCCCTTCTCACCCTCAAACGCCCCCGTCGATTCCCTGCAGCCCATCGTATCCTAAAACCCTACAACCACTGACCCACATCGTCTGTCGCCGATCAGCGTCGCCGTTTGTTCACAAGGAGAGCGGCAAAGGAGGTCGGGACTCGGTGTAGAGCGACGAGCCCAGCGAAGTAGGCCGATAGCTATCCGCCATAGCAGTGATGAAGGCCGGCTGGTGGAGCGCCCCTGTCAGCGCAGCTTTGCACGGGATCTCGCGCGGCCAGACATAGGAATCGCACAACCTTCTCAATCCCGACGCTGCGCCCCGATCGTCGCCGCTCGCCGTTGGAACCGGCACCACGACAGCCGGGAAGGAACCAGAGGTGCATCGCTTCCAGCACCAGCGCTCTGTCCCTGCATCTTCCATCCCCGGTAAGTTGCAATTAATCAAGACAATCCCCAGAGGTCAGGTGCCAATCCCACAAGATGTTAGAGTTGAAAGAACTTTGAGACACTGTTTGTTCCAATAACCAGTATTGGACCTTTGTTTACTACCACTCAGTATGGTCAACTTAATTCACATTATTTGCACGCAATATGGTGAGACAAGTGAAGTTTCAAGGTCTATACTTTCATGGCGATATATTTCATTGTTTGTTCTACAGCTCATGTGTCAGCTGATCGAAAGATTTGGAAGTGATGAAGCAGGCACATGGTAACAGTAGCTCTGAAGTATTATTTCATATTCAACCTATGTACATGAAGAATTCTAAAAAAAATTATAGATGTAGCTGCATGTTCATTCAGTGTCGAGGCACCCCATGCTGATTTTCCCCATAGAAAATTGAGTCTATCTCGTATATTTAATTACATTCGCTGTAAATACTGAACAATTCATGTGATTTTCCATCGGAAAAAAAAAATCAATCTACAGTGATATCTGAGCTGCTGGGCTGTGCCGTGCTGCTGCTCACTTTCGCTGCTGAGTGTTTCTTTGCAGCGAGGAGAGAGACCACTTTAACTAGAATGTTAAGAAGCTTAGGAGAAAATAGAAGGCACCATGTCTTTGGTATTTTCCTGACAACCTTTTACTGGGGCTCTAAGGATGATAAAATCCTGGAATTAGAGACAGTAACACACATCTGTTTGCAATTGGGGTCAACGAAGAAATACTGAGTTGCAATTACATTGCAAATGCAAGTGGATATCAACACTTCTGTACTGTCAAAGTTCCACTCGGATAGCTGCATAATAGAAGCGGCATCATCTTGCAGCCAACTTGCTGACCATTGCGGCTTTTATTTTAGATGACAGAGAAGGACGAGGTGATCAAACTGGCATACTGCCACTAAACACAACATATTTGAAAGAAGCAAAGAAACAGGTGGCATCAAGCTTTGCTGCTGAAGGAGGAATGGAGTGAACTGAAGCAATGTAATGAATTTGTACGGTGAGGAAGGCTTGGAAAGAAACATCGGTTAAAATACTTCCTCTGAACTTTTGAATGTCCAAAGTGGAACATATGAAGAGTACAGTAGATGAAAAACAACCTTGTGAGCCCAATATTTTAACTGTCACATCAGAGCCTTTGGGAGAAAGGAACCTGGTTATGAAACCGTTTCTTTGTGTAAAACATGATGTAAAGCTTCCAAATCCAGAACTACGCATTGCTAGCTGTTGGTTGTGCTCCATAGGCTGTGTTTAGTTCCACGCTAAAATTGGAAGTTTGAAGAAATTGGAACGATATGACGGAAAATTTAGAAGTTTGTGTGTAGTAAAGTCCGATGTGATGGAAAAGTTGGAAGTTTGAAGAAAAAAGTTGGAATCTAAACAGGGCCATAATAATATATCTGAGGGGCGGATGCTTGTTTTCATGTCTT

Explanation	CPC Score
noncoding (weak)	-0.910052

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0301400.2	5	13006732	A	G
Osa05LNT0301400.2	5	13007031	A	G
Osa05LNT0301400.2	5	13007424	T	C
Osa05LNT0301400.2	5	13009891	A	T
Osa05LNT0301400.2	5	13010031	A	T
Osa05LNT0301400.2	5	13010060	G	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0301400.2	osa-miR5796	Cleavage	4.5	17.864	1	21
Osa05LNT0301400.2	osa-miR5821	Cleavage	4.5	18.834	1	21
Osa05LNT0301400.2	osa-miR5837.1	Translation	4.5	15.841	1	21
Osa05LNT0301400.2	osa-miR818f	Cleavage	3.5	11.052	1	21
Osa05LNT0301400.2	osa-miR1850.2	Cleavage	5.0	21.453	1	21
Osa05LNT0301400.2	osa-miR1863a	Translation	5.0	21.371	1	24
Osa05LNT0301400.2	osa-miR2090	Cleavage	4.5	18.472	1	22
Osa05LNT0301400.2	osa-miR2102-3p	Cleavage	3.0	23.173	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0301400.2	5	yl(t)	Morphological trait	Shoot/Seedling	nan	nan
Osa05LNT0301400.2	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0301400.2	5	qLTG-5	Resistance or Tolerance	Cold tolerance	RM249	RG13

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus