\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0301500.1

AAATAGTTATCTGTAATACACATCGTGCCCAAATGATCTTAAAGAACAGTAAGGCAAAACATTTCTTCAAGCATCCTAGCAGTACAAGTTACAAAAACAACCAGTATAGACAAACTAAAAGGTCTATGCTAAAGCAAAAAAACAAATAACACCTAAAACTGAAAATATATATTTCCAAATATACTAAGGAGAAACCTATTCTCTTTCTGTATTGTTGGTAAAGCGCCAAATTAGGCCTCCGATAATATTGTTTATGGAGTGAGAAGCCATTGGAACTATGATGCTTGAAGAAGCTATGGTAGCTAAACCATATGCTACGCCAACAAACGTTGCCCAGATTGCAAATGAATATTTTCTGCCATTGCCCAAGTGAAGAATACCGAAAATGGCACTAGTTACAAAGGCACTTATCCAGTTCAGTCCAAAGATAGGCATCAATGCCCCTCGAAACAGCACCTCCTCGCTTATCCCAGGAAGACAAGCAACTACGATATAATCGAAAGTCTCCAGTGAAGTAAGGATTTGTCTATTTGCAGTCTCACTGGAATATCTGAAATCTGGCCATGTCTGTAGAAGAATATATCTGCTAGATGATATTATTATTACAAGTCCTGCAATCAACTCAAGATGCCAGGTCTCAAAATTGAATGACAAATTCATAGGGTCAGCAACCGGCCATCCATTCAAAGATGCAAAATGTGATGCCTCACGAAGAACGAGACCTCCTGCAAGGAGTAAGCTAGATGTGAGAGTACAAGCCTGAAGAACCGCATTCCTTGGGGCAACTGTGAATTTCTCGTCAGTAGTAACATCATTGGCATTGACCTCAAGGCTGGTGGTGGGGTTTTCGCCACTGCCTGAAGAAGAAGCTTCTTCACTTATAAATGTTGGACCTTGAGATATACTTTGTGATTTCCTCCTCCTTTCATTACTCTTTGCTGCAAATATTCTGACAGCATTGCGTCGGCCACTATGCAACCTTTTCCATGTAGCAACAACTGCGACTCCGCATTTCCAACTCTGTAAACCTCGGGGCGGGAGCGCGGCCGGCGCGAGCATCGCCGCCATCGGCAACGGGATGGCAACAATCTCAATCTCAAGTAAGCGGCGGCTGTGGCTGGCTGCGGCCGCCGAGGCGAGTCCGTCCAGAAAAGGACGGAGAGGAGCGGGAC

Coding Potentia
Explanation CPC Score
noncoding -1.19302
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0301500.1 5 13057712 C T
Osa05LNT0301500.1 5 13058810 A G
Osa05LNT0301500.1 5 13059757 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0301500.1 osa-miR415 Cleavage 5.0 18.664 1 21
Osa05LNT0301500.1 osa-miR1853-3p Cleavage 4.5 14.566 1 22
Osa05LNT0301500.1 osa-miR1854-3p Translation 5.0 20.924 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0301500.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
Osa05LNT0301500.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0301500.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus