>Osa05LNT0301700.2

GAAACTATGGGCAATGTTTTTCAGACCAACAAAGGTTTCATGACACACACACACACACAACATACATATATATATAAGACACCATTCAGAGCAAAGCTTCCAAGCGCGCTCTCACCCTCCATTCCACCGTTCTTAGTAGTAGTGACTTTAGCCTACCTTGCATAGTATATTGAAGCAAGGAGTTGTGTTATAACGCTGTGTAAGGTAAGAACAGCTTGCTTGTACCTACCTTCGGGTTTCCCGAAAGGGAAAACCGTATGTAAGCTTATCTGTTTAATATGAAGTAATTTTCCTTAACTATTCCTGCACGTTTGTTCTAGACAAGTGTTTATGCTAAGGACCCTATAGGAGAAACCTCTACGGTTTGTTCTCGTTTTTAGCCTGCATCTTGCATAGGCGTCTGGAGAATCGGCATCCGTAGAGAAGTGTTCCCTTCGGGTGAAACTGCCGAGTAGGACTTCACATCATCTGAAACAAGCTTCTGAGGCTGTCTAAGTAGGATTCGCCACCATTAATATTCTCCATGCCCATCCGTTGCTCCAGAAGCCTAGCTAAGATCAATGCCTAGCAGTTTTCACAACTTCACTAAATCTCTTTCCATCCTCCAGCTCACTCATCACATAACCAAGTGTACCACTCAGACTACCAACAATATGAGAAAACCAGAGCAAACAAACTGGATCTCCAGAGGCAATAATGTGGGTTACGGAAGCTATCACAGGCAAACCAGCTCCGACCTTGGGAAAGACGAACAACTACGGCAGAACTCTTTGATCAAAAGCAAGAAAAGGAAAATATATTCCAGTGATATGACTTAGTGCTCTTCTTATCTGTAATGGCATCATCGATTCACTGCCATGTTAGTTAAGACATCATTAATCCTCCGGCGTACTTTATCCTCTTGTCCCTCCACTCAACAAATGGATTGAAGTACACCCCAACGCCGATGCTATCCGCAAGCCGAGTAATCTCAATCACACAAAACAATTAGAGGAGCAACCAATTTAAAGGTGAGGAATGAACGCATACAGCGTCGGGGCCGAGGCGAGCCATCCATCCAGAGTAGTGCGTACAGCGCCGGGGCCGAGGCGAGCCATCCATCCGGAGTAGTGCGCGGGATTCCTCTCCAAGTTCTCGGAGTGCCACTGGAGCGGGTCGGGGATGCCGAGGATGTAGTCGATCATGGAGGCCGCGCCGGAGCGCGCGTGGAGGAGGGTTGAGCCGTACGCGCAGCAGAAGTCCACCGGCGGGAGGAGCTCGTCGAGCGGGCTGGCCAGCCCCGCCTCCTCCGCCAGCCGCATTTGGTGGCTCACGCGGGCGGGAGCTTCGGGGAGTCGAGGAGGTGAAGAAATGGCCGGAGGAGCGACGCGAGATGGACGCCGGCGGGCGTGGAAGAAGCTCACCCGGCCAGCGGCGGCGGTCAAGGATGACGGTGGACGGCGGTGGCGTTGGCCGCGATGAAGCAGTAACCCTAGCAGGCGGCGGGGAAGAGGAATAGGCAGCGC

Explanation	CPC Score
noncoding	-1.12921

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0301700.2	5	13090800	A	T
Osa05LNT0301700.2	5	13088791	A	G
Osa05LNT0301700.2	5	13088797	C	T
Osa05LNT0301700.2	5	13090152	C	T
Osa05LNT0301700.2	5	13090322	A	T
Osa05LNT0301700.2	5	13091789	A	T
Osa05LNT0301700.2	5	13091890	T	C
Osa05LNT0301700.2	5	13092514	T	G
Osa05LNT0301700.2	5	13091224	C	T
Osa05LNT0301700.2	5	13090799	T	A
Osa05LNT0301700.2	5	13092759	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0301700.2	osa-miR5516b	Cleavage	4.0	20.947	1	21
Osa05LNT0301700.2	osa-miR5516a	Cleavage	4.0	20.947	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0301700.2	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0301700.2	5	qLTG-5	Resistance or Tolerance	Cold tolerance	RM249	RG13
Osa05LNT0301700.2	5	yl(t)	Morphological trait	Shoot/Seedling	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus