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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0301800.3

CCTCTTCTTCCTCTCCCTCCTCACTAACCACCTTAGGCACATCAGTACGCTCATGCTCACCATCAGCAGTAACCACAACAATTTCATCATCGGAGTAGATGCCTTCATCATCAACACCAACATGTTCATTTTGTTTAAATGGATTTGCTAAGTACTTATCAACAAGTTGTGTGCTACTGCTAGGCTGAGATATAGTAGCCTGAGATGGCACTGCAAGAGATGGAGTGGATGGCACCTCATGTATGTCAGCCGCATTATGTACTGTCCCACTAGCTATCTTTTCAGGTGTTGGCCAATCAGCAAGTGGAAGAGCTACAACTGGCTCATTGTTGCTATGAACTTGAATCAACATAGATATTTCCTTGGTGGTGGCATTCTTGACAAACATTTCTAGCATACATTGGTCTGAGCACACTTGAGGATAGTTTTTGTTTACTGAATCATAGTAGTTCACTGTTATAAATTCATTCACCCCCCATGGGTACTTCTCCCTAATGTCATCAATAAAGTCCTTGAAGTTTGTCCTGTCACTGTCTACCACCTCCTCTGTTTTATAGGTGAAGTTCTCTCTACTATGATGCCCTTGGAGCCTGATTTTCAACAAATATGTTGTACCAGGATCCATCCCTTCAGGAACCCAAGATTTGGGAGTACATTGGCTTGCCTTCTCTATTTTCCTTGTCATTTTCGTCAAGTCATCGCGTGCGCCTACCTCTTCCCGCCGCCGGCCTACTCCAGGCGCCGCAGCTCCTGCGCGACCGGCCGCGGGCCGCAGCCCTTCCAGCGACCGCCGCCGCGGCCCCTCACCAGCGGCCGGCCGTCACCCCCGCTCCAGCGGCCGGCCGTCGCCGCCGCCCCAGCGACCGGCCATCGCCCCTGCTCCAGCGACCGGCCGCCGCCGCCGCCCAAGCGACCGGCTGCCGACCTCACCTGCCGCCTGCCTGCTCTGACGCCGCCGCTCCCGTGCCACCCATCCAGCGACCAGCCCTCCCGCGGTCGCCCCTCCCGCAACCGGCCGCCGCCTCCCTGCTCCGGACTGCCGCCCTCGCCGCGCCGCCTGCACAACCGCCGCGCACAAGAGAATCGCGCCGCCTGGTCAGGGGAGCCGCGCCTCCTCTCGTCCTGGTCAGGCACGATCTAGGGTTTCCCCTATTGAGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.776738
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0301800.3 5 13321434 A G
Osa05LNT0301800.3 5 13321950 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa05LNT0301800.3 DTM_#DNAt_MULE_japo_Os0372 Chr5 - 13319815 13322669 1272
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0301800.3 osa-miR5816 Cleavage 5.0 14.248 1 24
Osa05LNT0301800.3 osa-miR5073 Translation 5.0 11.989 1 23
Osa05LNT0301800.3 osa-miR5504 Translation 4.5 6.242 1 21
Osa05LNT0301800.3 osa-miR2101-3p Translation 4.0 11.994 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0301800.3 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0301800.3 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
Osa05LNT0301800.3 5 yl(t) Morphological trait Shoot/Seedling nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus