>Osa05LNT0302000.2

GGTCCCAACCACACAAACAATGCTCATGTCGATGCAACAAATGTAGTAATACTTGGGCCCTGTACTTGTTTGGTTCAAATGCTAGGCTACAATGTTGTTGCAATAAACAAATGGCTGACACCACACACACTGATACTGTTCATCACCAGCTGCCGTTACAAGGATTACAAAACTGTTTTGCTTTAGGACGAAACCTGCTGCTACGATTTTAATTCCCAAACCCTGTTGTAAAGATTGCATAACTCATGCAGTTCTACAGCAAAAAGGTTATAGAAGCTCACCATCGCAGGACACCTTCAACGCAAAAATGTATCCTGAACCAAAGGCCACTAATCTGGACATGACAACTGAGTCGGTATATGGTAGGAAAAGAAGCACGTATTGGGGATTTGAAACCCAGAGGCCAGGCCTATTTAGGAAAATGGATAATCATTTGGCGCACCACTGGTCACCTCATGGAATGGCGTATGTGGTTGCATCGAGAAATCAACAAGGCCTCGAGAGCAATCTGCCTGTCACACTCACAGATTGATTCATACAATGGATGTGACCCGGACAGAGTTGTCTGCAGACCCAGTAATGTACATTGGTAGCGTCGGGTGCCAATCCACACTTGTAATAGATGCACTATGAGCAAGTGTCCTCAGCCCACTTTCATGGCCTTGTACCTGATATATAGGAGCCCGGACAAGACCCGATGTAACCAACAGCCTCTTGCCATCAGAATCCAATGATATCTCATGCATGCGTTTGCTAAAGCTCTCTGGACTGCAAAACCTACTGCAATCTCTTGACCAAAGAATCTGGCCTTGATTGTGCAGGCTCCACTCAAATATCTTTCCATCTGAGCCCAAACTAAATATACTAGTTTCAGCAGGCCCGAAAAGAACAGAGCTGACAGGGGAATCATGGGCAGGCCATCCAGTGATCTGAAGACCAGCAGACATGTCAAACATGTGAATCATCCCATCTGTTGCAGAAGCTGCCAAGATTTTTCCATTATGATTGAAGCAAACTGAAGTAATAGCAGGTGGGTCCTCCCCAAGTGGTAGAACTGTCAGAGGTTTCCATGTTTTCATATGCCATACAGTCAAGGAAGCAAATCCTGTTCTGTCAAATATAGTTGATCCAGGCCGTCTAGATGCAGCTGCAGAGACAAACACAGGTTCTACAGGGCTACACTTCAAATCTAACACACTGGGAAAGTCTTTTGATGTACTGAGGTCGCAAACAACTCTCTTTGCATCAGCATTCCAAGCTTTAATGCCACCATTAGCTGTGCCTATGAGCAGCAAGCGGTCAGATCTGCATTCCCAAGAAAGAGCACTGACTTCAGACCCACAGTATATAGTGGCATTTTTGGATGATGGTGTTGAGGAATCATATGTCCAGATTCTCACTGTACCATCAACGGAAGAACTTGCAACATTTGATCCAGATGCAGAAAATCGACAGCAGCTAATTGAACTGTTATGGCCTGAAAATCCACTTTCACTTCTGGAAAGTCATCCTCTGTCACCAAAATCTGCTCGTTCTCTGCATTGCTTATTTGAAAAGATTTGTGCAATTTCTCATCTCTTGTAGAAGATTTCACTGAGCTCGAAGACTGTGAATCAAAACCCTGTGCAGCGCTTCTCGAAGCTGAGGATTCTTCGAAAACTCCTGGCATATCTTGTCCTTCAAGAGAAGAGTCAGCTGCACTAGTGTTGGGAACATTCATGTTGCCCAAATCAACACCAGTACTATTCCTTCTCAACTGAGATATTTCAGTCTCCTTCATCTCTAACAATGCTTGTAGCTCTGATAATTTGTTATTCAGTTGCTTTATGTCGTTCTTTAGGCATTTAATGGTATTCTTTTCAGTGCTAATTTTGAGAAGAGCTGGAATTCGAAGACCATTAAATATCCCGCTCAAAAAATTTCGGAATGAAAGAATCAAAGTGTCCGACCATTCTTTGGAGAAATATACACGGAATTGTGGATCCAAGCTTGGGCTCGTGATATATGGCATAGCAAACCATGCTTGCCAGTCTTCACGCTTCTGCAGCAGATAATTGCCATTAGCACCGAAGAATTCAACTACTTTGTCTTGTCTTCCAGATTTCAATGCATTGACAACATAATACCGTAACACCGACAGCTCCAATTTAATGAGAGCCGAGAAAAGCTCCGCATCCGCAGGTGAAGTGAAGCACTGCTTAAAAAAGGTAAACAGACCTTGCAACCTATCCAATTGGTACTTTGGTATATACACCGAGAAAACCAAATCTAGGATCTTGTCTACTTGAAAGTTCCTCCCGATCTCGGTAGACAATTCCGACTCGTACGATTGCAGAGTACTCGTGAAGCCTCTGAACACAAGAAATTCCTTGACTAGTTCTTCAGCATACTGCATGTTCTCCATTCTTGTCCAGTTTCACGGCGGGGCAGGCTAGCGAGGATGCGGTGGAAGCAGCAGACGCCGGCACAGGTGGAGCTCCGGTCGCGGGATGGAGATCGACGCAGGCGAGGCGGCGGCGGCGGCGGCGGCGGGCCAACTCCGGG

Explanation	CPC Score
noncoding (weak)	-0.546991

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0302000.2	5	13387248	T	C
Osa05LNT0302000.2	5	13385192	G	A
Osa05LNT0302000.2	5	13386558	C	T
Osa05LNT0302000.2	5	13386925	C	T
Osa05LNT0302000.2	5	13388580	T	G
Osa05LNT0302000.2	5	13388711	G	T
Osa05LNT0302000.2	5	13388871	G	A
Osa05LNT0302000.2	5	13389001	A	G
Osa05LNT0302000.2	5	13389820	C	T
Osa05LNT0302000.2	5	13390732	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0302000.2	osa-miR5793	Cleavage	5.0	10.29	1	21
Osa05LNT0302000.2	osa-miR5822	Translation	4.0	19.083	1	21
Osa05LNT0302000.2	osa-miR5143b	Cleavage	4.5	9.421	1	24
Osa05LNT0302000.2	osa-miR5143a	Cleavage	4.5	9.421	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0302000.2	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0302000.2	5	qLTG-5	Resistance or Tolerance	Cold tolerance	RM249	RG13
Osa05LNT0302000.2	5	yl(t)	Morphological trait	Shoot/Seedling	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus