>Osa05LNT0302100.2

GCAATAGCAACAGGGTAGGAGGTGATTATCTCCACCTTGAACTGAAATTCCAAACATCACACATGTTTTCAGTAACACACAATTGTGTTGAACGAAACCGAACAAGACTTAAAAAAGAAAGATTACAATATACTACAATAAATTGTTGGATCCAATAAAATTATGACTGGACAGTACACTTGCTATCATCCGTGTGCGTGGTAGCTTGAGAAGGAGCTATGGTGTGCATCGAAGGCGGACGATGAACAAGAGTGAAGCTTTCTCCCACATCAGCCGACCCATAGATTTTTCGCTTGATGTAGACTGCTATCCTACTATGGCCTCGGCTGTATGGGAATTACTTCACAAACATGCAGATATCATGCTCTTGAATAGCTCATGTAGTTACAGCATGATTCACTTGCAGCATCTCCAGGATTAGTCTTCCATATAGTTCATAGATCATACAACCTCAGATCTTAATGATCTTGGCAGCCCTGATCACAGGATTCGCGCGGGCAATCTCCTCCCTGCCCGCGGTTTTATAATCGAAGGAGCACTCATGGGTCTCGGAATGCCGGTGGCGAGGACAGAAGAGCTCCCCGCAGCGGCACCGGAATCCGGTCAAACCGACCCTCTTGCGGCACACGTTGCACCGGTTAACAAACAGCACCGGAGATAATGGCTCGGCTACCGCCGCCACGACCACGGCATTAGCATCGGTGGCGGTGGCTTCGGCTAGTTTCCTCTTCTTGGAAACCTCTATGAGAATACCTTCGCAGTTCTTGGCTGAGAATTGAGGAGCTGCTGCTGCCGATGCCGCTGCTGCTGCTGCCGGTGGTGTTGGTGGTGTCGATTGCGGAGGCGGTGGTTCTGTCATTTGTGCTGTTGGTGGCGATGGGGAGGCTGTGGTTGGGGAAGGAGAAGGTGAGGATGATGATGATGGCTTCAAGATCTCAGCCTCGTCCTTGTTGAGATCACAGCTCTCCTGCGCCATCGGATTTAACGCGGACGAACAAATCAAGGGAAGTGGAGGCGAATCCCAAGCTTGGACAACCAGATCAGGACGAATTGGGCGTAGGAACAGCAAGAAATGGAGTTTGTTGAGGTAAATAAAAGGTTCGGAAATGGGAAATCAATGGCTTTTTTTTTATTCCTTGATCGAATCGGTGCAGGCCTTAGACCCAAAACCAAAGAGGAAAACGAGATCTACGCAGGTAGAAATCAGAGAAATATTATTCGGAAAAAAGAAGGGTAAAAATTCTAGCTTTTCCTGCACCAAATCAAACGTGGAAATGAACAGAAAATCGGGCTGAAATGTTTACAGAGTAGGAATTTTCCCCCCTGATTTAAACGCAAGAACAAAAACACAAAATCTACAACACGCAATCGAGCCAGGAGAAGAGAACACGCGCAGATCAGGGGGAAAAAACCCAAAAAAAAAAAGGACGACCTTTTCAGCTCATACCAAACGCACCGAACCACGGATTTCTCCCCACCGCCCAAATAAACCCAAATCGAAACCGCGGGAGATGGATCGCCGCCGCGCCGCGCCGCGCCGGCTAAGCTGCCGGCGAGGGATCGAATTTCGAAGGAGAGACCAAAGAACAAGAACCAAAGGATTGGGGAAGGAAGAATCCGAAGAAGAAGAAAAGCTCCGAAACAAATCGGCGGGAGGGGGGCTCCCCCGGCGGCCGCGTGGAATCGACACCGAATCCGGGCAGATTCGACGGATCGCGCCGCGGGAGAGCGCCGAATTGGGGACGGAATTGGGCGAGGAGGCGAGCGCAGGAGGGAGGAGGAAGGGAAAGGTGGGAGCTTTGGGTGGAGGAGGAGAGAGACCGAGGTGCGTCTCTGTTGAGGTCCCGAAAGGCC

Explanation	CPC Score
noncoding (weak)	-0.464173

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0302100.2	5	13421694	T	C
Osa05LNT0302100.2	5	13421765	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0302100.2	osa-miR1440b	Translation	3.5	15.269	1	21
Osa05LNT0302100.2	osa-miR167a-5p	Translation	4.0	24.174	1	21
Osa05LNT0302100.2	osa-miR167b	Translation	4.0	24.174	1	21
Osa05LNT0302100.2	osa-miR167c-5p	Translation	4.0	24.174	1	21
Osa05LNT0302100.2	osa-miR167d-5p	Translation	4.0	24.174	1	21
Osa05LNT0302100.2	osa-miR167e-5p	Translation	4.0	24.174	1	21
Osa05LNT0302100.2	osa-miR167f	Translation	4.0	24.174	1	21
Osa05LNT0302100.2	osa-miR167g	Translation	4.0	24.174	1	21
Osa05LNT0302100.2	osa-miR167h-5p	Translation	4.0	24.174	1	21
Osa05LNT0302100.2	osa-miR167h-3p	Cleavage	4.0	17.789	1	21
Osa05LNT0302100.2	osa-miR167i-5p	Translation	4.0	24.174	1	21
Osa05LNT0302100.2	osa-miR172a	Translation	5.0	17.168	1	21
Osa05LNT0302100.2	osa-miR172b	Translation	5.0	17.168	1	21
Osa05LNT0302100.2	osa-miR172c	Translation	5.0	17.168	1	21
Osa05LNT0302100.2	osa-miR172d-3p	Translation	5.0	17.168	1	21
Osa05LNT0302100.2	osa-miR167j	Translation	4.0	24.174	1	21
Osa05LNT0302100.2	osa-miR528-3p	Cleavage	3.5	15.432	1	21
Osa05LNT0302100.2	osa-miR1854-3p	Translation	4.0	15.799	1	22
Osa05LNT0302100.2	osa-miR2868	Cleavage	3.5	13.108	1	20
Osa05LNT0302100.2	osa-miR2868	Cleavage	5.0	7.642	1	20
Osa05LNT0302100.2	osa-miR2868	Translation	4.5	12.651	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0302100.2	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0302100.2	5	qLTG-5	Resistance or Tolerance	Cold tolerance	RM249	RG13
Osa05LNT0302100.2	5	yl(t)	Morphological trait	Shoot/Seedling	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus