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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0302400.1

CCGCATCCCTCTCCTCTCCCAGTCGCCTCCCTCTCCTCTTCTCCCATACACGGCCGTCTCCCTCTCCTCTCCGGTATTCTCAGAGGTGAAGGGAGCCTGCAGTGGTAACAACGACGGCGCGTGGAGGTGGATCCGGCGATGGGGAGGAGCATAGGCGAAGCTCGTGGTGCGGAGGCGGATCCAACGATGGGGAGCAGCGACGAAGCTCGTGGTGCGCCGACAACGCGAGCTGCGGCGACTCAGGCCACGGGCGGTGGATCTGGCGGCCCGGGGAGTCGCAGGCGGCGGTGGGTGGTGAAGGAGAGGGGCGGTCGTGGTGGAGAGGTGGATCTGGCGGCGGGGAGCGGCGTGGTCGGTGGAGCCGTGGTGGGGAGGGGTGCGGGCGGCGGCGAAGAGTGGCGGTCTCCTCTCCCAGTCGCCTCCCTCTCCTCTCCTCCCATACACGGCCGTCTCCCTCTCCTCTCCTCTCTAGTCTTCTCAGAGGCGGTGAAAGGGTGCCTGCAGTGGTAACGGCGACGGCGGCACGGAAGCTGATCCGGCAACGAGGTGCAGCGACGAAGCTCGTGGTGCGGCGACAACGTGAGCTGCGGCGACTCGGGCCATGGGCGGCGGATCTGGCGGCCCGGGGAGTCGCAGGAGGCGGTGGGCGGTGAAGGAGAGGGGCGGTTGTGGTGGAGAGGTGGATCTGGCGGCGGGGAGCGGCGTGGTGGGTCCCATGGCGGGGAGGGGTGCGGGCGGCGGCGAAGAGTGGCGGTCGCGGTGGATCCAGCAGCGGCTGCCACACGACGACGACGGCCGGGCCTCGAAGGTTCCAGCGGCTTCCTCTAACCCCCTCCCCTCTCCCAGATCCAATGGGTGGCGGTGGTGCTCGGCCGGTGCTCGATCTGGCGGCAGCGACTCCGGCGGCACCCATATGTTTGATAATACAGGCAGAGTAAAAATTAAAATAATTCAAAAGTAACATGAATTCACTGCACCCATATGTTTAATCGAAGCAATATATATCCCTGCATCATATATAAAGTGCAGTAAAAAATATAATATTAATGCATGCGTGTTGTAGGTTCATAAGCCTAAAAAAAATGACAAGGTTAAAACATAAATATATAAAAATTTCTGACAATATGTTGATAAAAAGTATCAAATATTAAAGTGAACAAATACTCGCACGGTTATGCCTTGTGGTTTAGATCACATTGGTAGTAATACATGTGAGTATTTTAAGAAAATCAGCCAAGAGTCATATACCTGCTGCATATATTAAAGACAAAATTTGCTACAGAAAATTAAAAAAACGTATAATTAGCTAGTGGACAAAAAAAACTGGTAATTAGTTGCTGGACACCTGCCAGATTATGTTATTATATGTGAAGGAATTGGAGAGAGAAACAGCTGTGTAAGTACGATTTTACCCTTTATTTTTTTTTCCTTATCCTTGTTCTTTTCTCTCTATCTCATTCTTTCTCTCTTCTTCAAGTGAGCCCGAGGGCGACGGCGCGGCGAAGTCATGCTGGGCGCCTGGGTCACTCTCACGATTGAGTTTGTTTTATGTTAATTTGGCGAAGCTGCGGGCTACTGCAGCACCACAGGCCGCAGTGGCAAGAGCAAGCAGCAAGTCTGCAAGGAAGCCAAGGAGCAAGGAAGCAAAACTAAAAGGCAAATTTTGCTAAAGGACATTGTTAATGTGTGGTTTTAGCCCTAGGACACTACCTAAACTCACTTTTAGGGGAAAACACTCGATGAATATAGTAATTTGCCAGTGGACACCGTGACGATTAAAATAATAATTTCCGGTTAAAAAGGAGAGAAAAATCACGTGAAATGTCAAAAATGTCCTTGGGCCCACATGTCAGCTCTATCTCCTATCTCTCTTCTCATCTCTCTCTATCTTCTCTCCCAGAGGGGAACGGGGCGGCGTCGGTCGCTGGGGCTCGAGCTTGTTGCGGCGGAGGAGATGGCGAGGACGGCGGTCGGCGGAGTGGAGCACAGCGTCGGCTGCGGCGGAG

Coding Potentia
Explanation CPC Score
noncoding -1.04716
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0302400.1 5 13554374 A G
Osa05LNT0302400.1 5 13555572 A G
Osa05LNT0302400.1 5 13555613 A G
Osa05LNT0302400.1 5 13555566 G A
Osa05LNT0302400.1 5 13555411 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa05LNT0302400.1 DTM_#DNAt_MULE_japo_Os0053 Chr5 + 13555831 13556803 350
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0302400.1 osa-miR2868 Translation 4.0 10.054 1 20
Osa05LNT0302400.1 osa-miR2929 Cleavage 4.0 14.388 1 21
Osa05LNT0302400.1 osa-miR2275c Translation 5.0 23.433 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0302400.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0302400.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
Osa05LNT0302400.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus