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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0302500.1

GCACAGTTCAAAACATAAAGATTTATGAACTTTAGCAGTTCTGTTAGAAGCTTGCTGGTACCATTCAGGTAACATTGACAAAAATTGCAAGTGCTCCCATGAAGAAAATGCTTTTGCAGCAGAGGAAGAAAACAGAAAATTCTAGGCATGGGAAACCCCAGTGGCAGAATGTACATCATACTCATTATTTGAAATGCTTCCGCTTAAATGCTCAAAACATTTTAATGAAAGTAAGAAACAGTGGTCCCTCAGTTGACAACATCAAGGACCAGCTTGCGTGACTTCAGGACGGACCACCTCATGCGACGGTAGTATGCGGCTTGGAGAAGTGCAAGTGACAGTAGGAAGATCCATTTCACTCCCATCAGTTTCCTCTCTTCCATCTCAGGTTCAGCTGCCCATGACAAGAACGAAACGACATCCTTGCCCATCTGGGCTTCAGTGGCAGGAGTACCATCTTCATATTCAACAGCTCCATCTATAAGCATCTTGGGCATAGCTATGGCACCACCAGGGAAGTAGGGATTGTAATGCAAACCCTCACGGATCTGAACACCGGCAGGTGGATCACGGTAACCAGTAAGAAGAGCAAACACATAGTTCTGGCCATTGTGCCTTGCCTTCGTGATAAGACTGAGATCTGGTGGGTATGCCCCACCATTTGCAAAACGGGCTGCTTGCTCATTTGGATATGGTTGTGGGAACCGGTCACTTAACTTACCAGGACGTGTGAACATTTCACCCTCATCATTAGGACCATCAACCACCTCAATCTCAGCAGCCATAGCCTTTGTTTCTTCTTCAGTGTAGGCCACACCAACCAAATCTCGGTACGAAATTAATGACATGGAATGGCAAGAGGCACACACTTGTGTATAAACTTGATGTCCACGCCGAATAGATGCATGGTCATAAGAGCTAAGAATGCCAGCATGTGGCCAGGGATATTCAGCTGCTGCCAAACCATGCTCAGCTTCATCTGCAGAAGCTATTGTAGCAAAGCTTAAAAGACCAGAAGCACCAACTCCAAGAAGAGCCAATGCTCTCAGTCCAGCGGAGGATTCTTCATGCTTTATCCGGAACGAGGATAGCAGAGATGAGCCTGAGGACTGATTATGGAGTGTTCTCCGTAGGAGCTGGTTAATGCCCCGACCAGCAGCCATCCAGGATACGGAAGGGGAGGAGGTGGGTGCCCTAGCCCTAGCTCAGCCTCAGCTCGGTCGTCCGCCTTACCGGGAGGGGGAGGAGGAGGAGGAGGACGAGGAGGCGAGCACAAGTGGAGGTTCCCAAGAGAAGAGAAGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.932993
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0302500.1 5 13544286 A G
Osa05LNT0302500.1 5 13545603 T G
Osa05LNT0302500.1 5 13545873 C T
Osa05LNT0302500.1 5 13546873 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0302500.1 osa-miR2873c Cleavage 3.5 20.705 1 21
Osa05LNT0302500.1 osa-miR6247 Translation 4.0 15.495 1 21
Osa05LNT0302500.1 osa-miR528-3p Cleavage 4.5 24.042 1 21
Osa05LNT0302500.1 osa-miR2864.1 Translation 4.0 21.413 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0302500.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
Osa05LNT0302500.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0302500.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus