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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0302900.1

AAGAAGTTTTGCTTGTATTATATCATGTCCGAACATGTAAGATTGGGCTGAATGCCAGTTCTAAACATAACTGAAACAGAAAAGATGCTATTTCTTTCGACACTGTACAGAAGTTAACCCCTATGTTTTTTTTCTACAAGGACTAGAGGGCTACGAACTTGTTTCACTGAAACTGCTGGCTTTGTACACGGAGCACCTACTATCAGCTGAACAAATAGAACCAAGGTATAGAATTGTTACATGGCTGGATTTAAGATCTGGACAGCACAATCAGACATCTGGAATCTATAGCGACAAAGCATATGCAAATAACCCATCTATCTAAACTGATCTTCATGCACAATTGATTTGGTTGAGCAAACTGTTGCACATATCATGTATGTGGAGGCCTCGGCAACATAGAGTTAGCCAGTTCTTCATTCAACTTTACAGGAAGGGGTGGCATCTGCCTCATTATCTCAGGAACATCGCCTATCCTGTCCTTCAGGACTGCAAGTATATTATCCCTAGTTTGACATAAAAGAGGGATGTTCTCCTGCACCTGCATGTTTGAAATATTGGTATAGATCTGGTTCAAGATCTGTGCATTGTGCTCAAGAATTTGACCAGTTTGGCCTCCAATTGTTTTGTATGACACATCATCATCATCCATGGGAAGAACTGGAAGAGAATATGGAGCAGCATTAGGTCGGGCCACTAGGTGAGCTGGCCCTTTTGATGAAGAATCATTGGCTCTCTCCTTCTTTTCTTTGTTTTTCTTAGATGACTCTTCCTTCCTTTTCTTGTTACTCTCCTTTTTAGCCATCCATCTGCAACGCAGGGCCACATCTCGCACTGTCTTGTCAGGCAGATTCATAGCAATTTTTGCATAGCGAACTACAGCTGCATCCGCCGCATAGCTGGCCAGCCCTCCTTCGAGCACGGCCTGCTCCTCGGGCGTCCACCGGACGGAGAGCCCCGGGTCGTGGCGCAGCGCCGCCGCGGTGCTCGCGCCCGGCGGCTGGGCCAGCGCCGGCGCGGGGGAAGGGTTGCGGTGGTGGGGCCCGCCCAGAAGCACCCCCGTGGGGTCGGCGTTCGCCCCCATCTCGCCGCCTGCCACCGCCGCCGCCAACTCGGCAACCCCCCCTCAGGCCAGGGGACGACGGTCCCGCCCAAACCCGAGGGAATCTCGCGAAGGCGCGCAGGGATTCCGCGGAATCAGAGCTCTGCGCGGCCGGGCGGCGGCGTCGGCGGCGGCGAGGGTTTGGATTCTCCGGTGGCGCGGCCGGCGGCGAGTCGGGGGACGGGGAGCGAGGAAGGGAGAAGGGAAACGAAT

Coding Potentia
Explanation CPC Score
noncoding -1.05582
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0302900.1 5 13823493 G T
Osa05LNT0302900.1 5 13824269 A G
Osa05LNT0302900.1 5 13825048 T G
Osa05LNT0302900.1 5 13826082 G C
Osa05LNT0302900.1 5 13826708 T C
Osa05LNT0302900.1 5 13826790 T C
Osa05LNT0302900.1 5 13827200 A G
Osa05LNT0302900.1 5 13828564 A C
Osa05LNT0302900.1 5 13824492 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0302900.1 osa-miR5528 Translation 4.0 20.155 1 21
Osa05LNT0302900.1 osa-miR5807 Cleavage 4.0 20.266 1 24
Osa05LNT0302900.1 osa-miR530-3p Cleavage 5.0 18.899 1 21
Osa05LNT0302900.1 osa-miR5499 Translation 4.5 6.451 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0302900.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0302900.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
Osa05LNT0302900.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus