>Osa05LNT0303000.2

GATAAATCCACCCTACTAGATTAAAGATTCAAGGACCATCCCAACAACAGGCTGGCTCTGATAAGAAAGATGAGATGGACTTGTTATCTGAAACATGCATATACGAGAGTCGGGGATCGCCATGCTGCTTTTAACCATGCAGCAAAATGGTGCAACAACATAGCAACACTACTACTATGCCCCATCTGTATAGATTAACATATGATAAATTCAATAAAATGACGCATTTTTTAGCCCCGCACCTGAGCCCCTCGTTGATAAAGTTGAGTGTCCTGCTTACATAGCACTACTAGATAAGGTAACATCAACCATTGCATGACTTGAGAACCCCAATTACAACTGAAAGTGTCGTCATAATCAATCAAATTAGTAACAATAATATGTGGAACAAAATGGATAAAAGATATTTACTAGTACGCCACCCTCTTAACCCAATCAATAGCTGCCCCTAATTTTCATGTTCTATTTGTTCAGGCTACCTCAGGTGTTGATAAACTAAAACCTTCTGGCTTTACACTTACAGCTTCCTCTTTAGGTTGCAGGGTTGCAGCATCGATGGATGGTTCCTGCTTAGCACTTATAGCTTCCTCATTAGGTTGCACCACTGAAATATCTCTGGATGGCTCCTGTTCTACTCTAGCTTCATCATCAGGTTGCACCAATGCAGCGTCACTGTGTTGGTTCTCCTTATCAGGTTGTACCATTTCAATATCTCTAGGTGGCTCATCTTCTACTCTTTTAGCTTCCTCACAAGGTTGCAGGAACAAAGTGCCACAAGATGCCTCCTGTGTTATTACCGTTGGCTGCATTAGGACATCAGAATCATGAGCATCTCCAGCCACTCTAGCTTCATCCTTTTCAACATCAACAGCTTGACCATCCTTCTTCATGAATTTCCTCTTGTTCCATTTCTTCTTGAAACCACCTTTCTTTGCTTTAAGTGGTTTGGGGGTTTCAATTGGCCTTTTTTCTACCTCCTTACCTACCCTTTTACCAGGAACTACGATATATTTTGTCGCACCATTTGCAGAACCCTCTGATTGACCTTGGATTGCCAGAAGAGCAGTTCGGGCAGCTTTTATCTCTGCATCTTTCTTTGTTCTGGCTGCAGCACCAATATATTGTATTCCACCAATCTCTACAGTGCATAAGAAAGGAGCCAAGCCTGAGGCTGGTTTGGTGCAAATATAAGATGGAATGGCATAATTCATCTTCTGTGCATACTCCTGAAGAAGATTCTTGCACAGCCCAGTCTCTTGCTGGCCCATCTATACAAATACGCTCCCTTCTTGCTCACTGGGTCCTAACTATAGCCAACAATCTAGTGATCTACAAACCCGAAAGCTCCAAGTATTCCTGGAGTTATAGTCCATGGTTTGCCTTTTCTGTCTCTGTTTTTATGATTCTTATGCCGTTCTTCAGATTTCCGAGAATTCAAGACCAATAACTGTATGAAACAAAAAGACCATTCCAATGCTTTCTAATAATTATCTATTACAGCAGCAGGTCCCAATAGCCCTTGCTTGCACAATGCTCCAATCAGCTGCCCCAACACTAGTGCATCGTGCACAAATAGTGGCTCCAACAGTAACTCATGTGCCTGTGTGGCACCACCACCTGCCTGCCGCAGGCCTATCAGCTCCGACAATGCCGTTGGATCCCACCGCAGGCCACGCCTTATTGCCTCCTGCACCAACTCCCTCACTGTGCCCATGTCCCCAGCAGACATGCACCCGGAGACTACCACGCCAAATGTCCTTATATCCGGTGGGCACCCGGCGTGCTCCATGCAGGTCATCATCCGCCGTGCTCCAGCAAGGTCACCTTTCCTGCATAGCGCACTGATGTACACATTGTACACATCCACGTCCGGCACCAGCCCTCTCAGGAGCATTTCATCGAACCCCTCCTCCACAGAATCGAACTCCGGGGTCTCACTGAAAGCTTGCATTATTAACTTGAAGTACGCAAGTGCAGGTGCCACACCGTTAGATCCCATCTTATTCTTCATGACCTCATATGCCTCCGCTACCTTTCCCTCCTGCAGAAGTGCGTCGAAGACGGCGTGGTAGTCAGATCTGCTTGGGGAAATGCCCCAATGGCACATCTTGTCCAAGAATGCTACTGCATCCTGAGCGGAAGCATACTGGCACAGGGAGGAAAGGACAGCACGACAACTGGCCGGGTCAGGGTCAAGTAGAAGCGAGGGCATGCAGCAAAGGAGGTCGGCGGCGGCGGTGGGGCGGTGGGCCTGGCAGAGCGTGGAGGTGAGGATGTGGAAGCTGGTGGCGTTAGGGGAGACTGACGGGGCAGCAAGCAGGAGGACTTTGGGGGCGAAGCGGAGGAACGCCGGGGAAGAGCAGATAGCAGCGAGGAGGGAGTTGAGGGCGCGAGCAGTGCGGAGAGTGGAGGAGAAGAGGGTGGCAGCGGCAGCAAGACGGCGGTGACGTGCAAGGGTTGCCAGAAGGCAGTGGTGGTGGTCAGCTTCTCGGTGCATTTCCCTCTGGTTTAGTTGCTGACTTCCTATGTTGCACAAGCCAGTCTCTTGAACAGCTGGGATGTTTGCGTTGGCTGGTATGGACTTGACAATTTCCATGAGGGCAACTTCAGCAGCAGACTGTTCTGCAGCCTTTCTGTTGGAGAATCCGGGCAGGGAGCCATAGCTGGTGTTATTAATCACCACTGTGGACTTGAAGACAGGCTCATGGGAAGGTCCCTCCTTGGAGGTATGATACTCTGGAGTCTGGAGGCCGGCTTTCTGCGCATACTCTTGCAGCCGGCTCTTGAAGACGTAGCAGTTCTCAACCCGGATTCCGGCGGTGGCGCCGATGGGAGCGGGCGAGGTGTTGGCGGTCTCCGGCGGAAGGGGTGTGGGAGCACTTTTTTTCTTCATGTTTCAAACCTTCGTCGGCCGGTGGAGCCGTGGAGGTGTGGACTGGAGTGGGAGCCTGCTGCCCTGCCGTGCTGCTCTGCTGGAGGGGAGGCCGCGGCCGGGCGCGCTGCTGGCTGCTGCCGGCGCGGCGGCGCCCGGCTGGCCGCTGGCGGTTAGCGC

Explanation	CPC Score
noncoding (weak)	-0.772524

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0303000.2	5	13941942	T	C
Osa05LNT0303000.2	5	13942155	G	C
Osa05LNT0303000.2	5	13942493	T	G
Osa05LNT0303000.2	5	13942504	C	G
Osa05LNT0303000.2	5	13942988	G	A
Osa05LNT0303000.2	5	13944030	T	C
Osa05LNT0303000.2	5	13944083	A	C
Osa05LNT0303000.2	5	13945194	G	A
Osa05LNT0303000.2	5	13945388	A	C
Osa05LNT0303000.2	5	13945458	G	A
Osa05LNT0303000.2	5	13946032	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0303000.2	osa-miR171c-5p	Translation	4.5	17.125	1	21
Osa05LNT0303000.2	osa-miR171c-5p	Cleavage	5.0	14.995	1	21
Osa05LNT0303000.2	osa-miR415	Translation	4.5	23.601	1	21
Osa05LNT0303000.2	osa-miR1870-5p	Translation	4.5	21.251	1	24
Osa05LNT0303000.2	osa-miR1320-5p	Cleavage	5.0	10.134	1	21
Osa05LNT0303000.2	osa-miR2097-5p	Cleavage	4.5	7.657	1	22
Osa05LNT0303000.2	osa-miR2097-5p	Translation	5.0	17.906	1	22
Osa05LNT0303000.2	osa-miR2864.2	Cleavage	5.0	15.548	1	21
Osa05LNT0303000.2	osa-miR2928	Translation	5.0	6.191	1	20
Osa05LNT0303000.2	osa-miR3982-3p	Translation	5.0	21.96	1	21
Osa05LNT0303000.2	osa-miR5076	Translation	4.5	8.367	1	22
Osa05LNT0303000.2	osa-miR5076	Translation	5.0	14.38	1	22
Osa05LNT0303000.2	osa-miR5517	Translation	5.0	18.607	1	21
Osa05LNT0303000.2	osa-miR5511	Cleavage	3.5	21.575	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0303000.2	5	yl(t)	Morphological trait	Shoot/Seedling	nan	nan
Osa05LNT0303000.2	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0303000.2	5	qLTG-5	Resistance or Tolerance	Cold tolerance	RM249	RG13

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus