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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0303600.1

TTTGGAAAAAAAATCTATGTAGTGGTATTATACAATATTGGATGCCACGTAGGATATCAATGCACATGTACACAATAGTCCACCTCAGCGAGGAGAGAGAGGGGTCACACCTATCATTGCCACCATATCTTCTTGTTCCTCTCATCTCCCTCCCCCCTCTCTGTCCTGCTGCCCCTGACATGAGGGTCCATGATGAGCTCGATGGAGGTGACTCTGCGCATCGTCTCCTCTTCAATTTATATCTCACCTATTGGCCGGTGAGCTCGTTCCACTCCGGCTTACGATAATGTTGGGCAAGCTGGCATTGGATCTTGATGCCGACCATCTCCTCCGTTGTTGGCTACCTCCTCCCCGTCTCCTCTACCTTTGCAGCTGACCATCTTCTCCTAGAAATGGAGGATAGTGTAGGTTGCATCAATGCTTGCCGCAGCAGCTTGTTTCACCTCCTTCCCCATGCTGCACCTACGCAGTCAGGCGACACTGCTTTTTCCCTTCGATGCATTGTCATAGCTCCTTCTCCACTGCCACCTCCTCCTGTTTAAGCGACCCGTCACCAAGACCAGGGCAGCAAGCTCAACAGACGTAGTGGCTAAGTTGGACCTTGATACAGAGGGGTGGGAGAGTGGGGAGGAGGTTGATCTCGAGCTCACCGGCACATTGAGGAGGAGGCGGTTAGTCAAAGCTCGAGGCCGCCAGTGCATGGAAGAGGCTCTTGGAGAGGCAGAGTTTGAGCTCGCCAACACCGATT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0799921
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0303600.1 5 14647138 A T
Osa05LNT0303600.1 5 14647345 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0303600.1 osa-miR1437b-3p Cleavage 5.0 20.337 1 24
Osa05LNT0303600.1 osa-miR1437b-3p Cleavage 5.0 20.071 1 24
Osa05LNT0303600.1 osa-miR444a-3p.2 Translation 5.0 20.99 1 21
Osa05LNT0303600.1 osa-miR529a Cleavage 5.0 24.131 1 20
Osa05LNT0303600.1 osa-miR444d.2 Translation 5.0 20.99 1 21
Osa05LNT0303600.1 osa-miR444e Translation 5.0 20.99 1 21
Osa05LNT0303600.1 osa-miR2097-5p Translation 4.5 15.255 1 22
Osa05LNT0303600.1 osa-miR2864.1 Cleavage 3.0 19.386 1 21
Osa05LNT0303600.1 osa-miR2925 Translation 3.5 20.063 1 19
Osa05LNT0303600.1 osa-miR5149 Cleavage 4.5 12.65 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0303600.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
Osa05LNT0303600.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0303600.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus