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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0303700.1

GGCAACTTTTCCATTTCATACACTTATCGCTATTGATTTGTAATAATTTATAATTGATTACTGCTAACTTGCTAAGCTAGCAAATTTCATTATTAATTGATTATCAATGTGGAGTTCAGATGTACCACTTAACCACAAACATCAGATTCGGCAGCAGGATAAGATAATGCACAATTACAATAGACTTGAGATGCAACAATGATCCAGAATCGGGGACAGGACTTATTGAAATTGCTTCCACGAAGGAACTCTTCTTCACCAACAAACCAAGCCATGGACAAAATGGCGCTGGAAGCGTTGTGGGAGATGGGATCCAGTGATTGCCTGGGCACCTGCTGGTACATGGCCTCTGTCGCCTGAACACCGGAAGTCGACGATTGGCCAGGAGGCAGAGCACGGGCCGATTCACAACGTATCATGGTTGCGCTCTAAATCGAGGCGGCGGTGGTGGTTGGGGGAGCGGCGATGGCTGTCCTCCTCCAGCCATCGGTGGAATGCGGTCGACGCGCGATACCATGCACCGCTCCCTGGAAGAAAGCCGACGCCCGGCAACCATGGGGAAGCACCTGCTGCATTCCGATCTGTTGCGAGGAAGAGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.989475
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0303700.1 5 15060235 A C
Osa05LNT0303700.1 5 15060272 G A
Osa05LNT0303700.1 5 15060305 A C
Osa05LNT0303700.1 5 15060324 A G
Osa05LNT0303700.1 5 15060349 T C
Osa05LNT0303700.1 5 15060322 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0303700.1 osa-miR6256 Cleavage 4.5 14.835 1 22
Osa05LNT0303700.1 osa-miR5081 Translation 4.5 9.985 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0303700.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0303700.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
Osa05LNT0303700.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus