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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0304300.1

AACCCCCAACGCTTAAGAGCACATGAAAACCTGCTGCCAAAACTTTGATGTTACAGCTTACAATAACAATCAGAATGGTCTGGTGCTTCTGCGACAAACAAATGTTTCAAAACTCGTCCCTTTTGCACCATTAAATATTTCTCCCTAGGCCTTTCAAAATTGTGAAAAAGTATTATGAAAAATAGACTAATAAGCTCGCCTAAAAGCATATGACAAGCTACTGTAAAACACCATCCGTTTTGGTGTTTTGGATGGAACTAGATTTCTATGGCTTAAAAATGAAGTTACAGACATGAGAATTCACAGTTCCCACCGATGGTACGGCGCAGCATGAGCGTACAGTTTGTGAAGTGATTTACCAGTTCATGCTCACTTAGTCACTGCAATTTGCGTTAAAATTGCATATTGCCAAAGCATTTTGTCCAATGAAGCCTCATGGAATTATCTCCTGCTGTTTGCTGTTTGAGCCTTGTTTAGGTTTGCAAGTTCTTCAATCAGCTTCCTCTCGTCGCTGCTCAGACGCTTTGGAATCTCGACCTGCACACGCACTAGCTGGTCTCCACGAGCATTTGACTTCCCGAGGAGTGGGACACCTTTCTTGGACATCACTAACGTTGTGCCTGGCTGGGTACCGGAGGGGATCTTCAGGTCAACCATCCCATCAACAGTGGGAACCTTGACGGTTGTCCCAAGAATTGCGTCAATATATGAAACTTTGCATGTGTATAGAATGTTTGTCCCATCTCGCTTAAGAACAGGATCAGAGAGAACATCAATAAACACATAAAGATCTCCAGGAGGGCCTCCTCTCCGCCCAGCATTCCCCTCAGACCGGACCCTCAATCTGCTTCCAGAATCAACACCAGCAGGAACCTTTAGACTGATCCTTTTTGTCTTCCGCACTCGGCCATCACCCCCACAAGTGTTGCACGGGGTAGAGAATTCACCAGTGCCTCCGCAAGTATTGCAGGTGGAGACCTGCTGGAATATTCCAAGTGGCGTTCTTGTTGAGGAGACCACTTGTCCCTGTCCTCCACATGTTTTGCATGTGGTTGGTTTCGTTCCAGGCTTGGCACCAGTTCCATCACATGTATTACAGCCTTCCAGTCTGGTGATCTCAATTTCTTTCTCTACACCAAACACCGCTTCCTTGAAATTGAGTACCAGATTGTAGGCCTCATCATCACCCTGCATTGGTCTGTTCCGAGCAGCACGGCCTCCCATTCCCCCCATTCCACCAAAGCCTTCGAATAATGATTCAAAGAGATCGAATGGGTTTGAGTAATCTCCTGTTCCCATTCCAGCACCCTTCAAACCAGCTTCTCCATATTTATCATAGATTGATCGCTTCTCATCATCAGACAAAACCTCATAAGCATTGCTAATATCCTTGAACTTTTGTTCAGCACCAGGATCTCTAAAGAAAAATACACAAGCATAACAATTGCTTATTTGATTATGTAGTTATGAAAAAGGTAATGCAACAACTAGTACTCAGGTTTATAATGGATCGAAAGGAGAAAAAGAAGCAATATATCGAGTGTAGCTGAAACACAATTCCCATATAATGGTTAGTACTTACTTGTTCACATCAGGATGGTAGCTCCTAGCAAGCTTCCTATAGGCACTCTTGATTTCAGATTTACTAGCATTTCTTGAAACACCAAGTGTGGAATAGAAATCAGCATCAGCTCTGACAATGAACCTTGAACTCCTTCGATGGCGAAATCTCGGTGATGGTGCATGGTTAAATAGTCGAGAAGATGTCCGTGATTGTAAACTAGCAGTAGGTGATACAAGGTGTTTAAGCCTGCCTCCACTACCACTTTTCGACACCAGAAATCTTGGATCAGCATAAATAACTCTTGTAAGTGCAGGTGACCTGGGCAACAGCTGAGGTTTTTCCCCAAGTTTGGGGGCCAAGGTACCTCCAAACTGTAGCAACGCCATTGAAATACTTGCTGGATACCCACAAAGCTTCAACCTTCAATATACTAGCT

Coding Potentia
Explanation CPC Score
noncoding -1.04066
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0304300.1 osa-miR5529 Translation 4.0 23.692 1 21
Osa05LNT0304300.1 osa-miR5816 Cleavage 4.0 14.64 1 24
Osa05LNT0304300.1 osa-miR5837.2 Cleavage 4.0 5.32 1 21
Osa05LNT0304300.1 osa-miR167d-3p Cleavage 4.5 20.296 1 22
Osa05LNT0304300.1 osa-miR166i-5p Translation 5.0 22.61 1 21
Osa05LNT0304300.1 osa-miR2095-3p Cleavage 5.0 5.526 1 20
Osa05LNT0304300.1 osa-miR2097-3p Cleavage 4.5 20.113 1 22
Osa05LNT0304300.1 osa-miR2275a Translation 5.0 22.9 1 22
Osa05LNT0304300.1 osa-miR2275b Translation 5.0 22.9 1 22
Osa05LNT0304300.1 osa-miR5498 Cleavage 3.5 9.976 1 21
Osa05LNT0304300.1 osa-miR5519 Cleavage 4.5 16.479 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0304300.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0304300.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
Osa05LNT0304300.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus