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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0304700.1

AGACGGACAACGTTGTCAGAATCATTCCCGTGAGGTAGATGAGGGAGGAGACGGTGAAGGTCCAGAAGCGGCCGAGGAAGGCGTCGGCGATGTAGGCGCCGGCGATGGGGGTCATCCAGACGGAGCCCGTCCAGTTGTTCACGTTCCGCACCGACGACACCGTCTCCTCCCGCAACTCCGTCGTCAGGTACACCACCAGGTTCGCCGCCACCCCGTAGAACGCCATCCGCTCGAACGCCTCGTACCCTACTAGGAAGGAGCAGGCCTTCCAGCGGCCGGTGCGAGCGGCGACGGCGGGCCGGCCACGGAGGTCGACGGAGCCGTCCTTGGTGAACTCCTGCTTGGCTTCTTCTTCCATCTCGATCTCTCTCTAGCTAGCTATCTGCGTCAGTCTGTCACTCGACCTGTGTGTCCAAATGTGCTTTGGCC

Coding Potentia
Explanation CPC Score
noncoding -1.18815
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0304700.1 5 15710752 C T
Osa05LNT0304700.1 5 15710852 G A
Osa05LNT0304700.1 5 15710933 G A
Osa05LNT0304700.1 5 15710935 G A
Osa05LNT0304700.1 5 15710969 T C
Osa05LNT0304700.1 5 15711018 C T
Osa05LNT0304700.1 5 15711055 A G
Osa05LNT0304700.1 5 15722160 T C
Osa05LNT0304700.1 5 15722164 G A
Osa05LNT0304700.1 5 15722226 C G
Osa05LNT0304700.1 5 15722679 G A
Osa05LNT0304700.1 5 15723261 G A
Osa05LNT0304700.1 5 15723281 A G
Osa05LNT0304700.1 5 15724476 G A
Osa05LNT0304700.1 5 15724509 T G
Osa05LNT0304700.1 5 15724680 T C
Osa05LNT0304700.1 5 15725099 T C
Osa05LNT0304700.1 5 15725614 A G
Osa05LNT0304700.1 5 15725649 A T
Osa05LNT0304700.1 5 15725806 T C
Osa05LNT0304700.1 5 15725869 G A
Osa05LNT0304700.1 5 15725907 T A
Osa05LNT0304700.1 5 15725948 T C
Osa05LNT0304700.1 5 15726580 G A
Osa05LNT0304700.1 5 15726585 T C
Osa05LNT0304700.1 5 15726635 G A
Osa05LNT0304700.1 5 15727054 C T
Osa05LNT0304700.1 5 15727450 A G
Osa05LNT0304700.1 5 15727457 A G
Osa05LNT0304700.1 5 15727642 T C
Osa05LNT0304700.1 5 15727700 C T
Osa05LNT0304700.1 5 15727717 G T
Osa05LNT0304700.1 5 15728092 G T
Osa05LNT0304700.1 5 15728110 A C
Osa05LNT0304700.1 5 15728479 A T
Osa05LNT0304700.1 5 15728576 G A
Osa05LNT0304700.1 5 15729103 G C
Osa05LNT0304700.1 5 15723887 T C
Osa05LNT0304700.1 5 15710947 T C
Osa05LNT0304700.1 5 15711025 A G
Osa05LNT0304700.1 5 15723101 T G
Osa05LNT0304700.1 5 15723359 G A
Osa05LNT0304700.1 5 15727638 T C
Osa05LNT0304700.1 5 15710757 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0304700.1 osa-miR408-3p Translation 4.5 19.672 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0304700.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0304700.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
Osa05LNT0304700.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus