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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0305100.1

GGAATTGGGACGGAAGCTTTACATTGCAGGTTCAGATGGAATAACCACGATACATGTACACTCAGCAGTCAACACGACACAATTATTTCGACGCACATGATCAAAATAACCCCCTCAAAACAACAGCTAGTAAATAAGCAACCTGTGAGTTACAGATATACAAAGGGCCATGAACTTCTTCGGCATATCGAATCGTCATCATCGAACAACTATATTTGACAACAATTTCATGAACTGAGTTTAGTATTTACACAAGCTAAAAATAATCAACCAGTATACACTTGCATTGCTCCTGAGCTCCAAAAGAGCATGAGCAAAGTTAATGCAAGGATTTGATCCTTCACATATCAATTGCAGGTTTCTATGACATTATGCCCACGTGATTTGCATTGGAATCTCGCTATGAGCAGCACTTTGGTGGAGGTTCTTTCTCAGGTTCATCGTCGACGATTAAAATGCCTTTCTTTGGATGAGCCAGTGACAAGCCATCGGAGCTGTTTTTTCTTCTCTCTAATAATCTCTTGGCTATGTCACTGAAGATATCATCAATCCCAGTACCAGCTTTGGCAGAAGTAACAAAGAGAGTTGCCCCAATACTTTCTGCATAGCTTGCTGCTTCATTAGTGTCTATGTGTTTTGATCTAACCAGGTCACTTTTATTTGCTGCAATGGCCATAACAATATCTTTATTTGCCATTTGCTTAAGCTCTTTCACCCACTTTGTGACACGAAGAAAAGTATCATTGTCTGTGATGTCATATACTAAAAGAGCAGCGTCTGCATCACGATAGTATATAGGGCCTAGTGCATGGAACTTCTCTTGTCCAGCTGTATCCTTCAACAACAAGGCGCTTTGTCAAATATGAAGCTTGAACAGTTGCTTCCTGTTTGTCTGAGAAGACATCATTCACATACCGCAGCACAAGAGATGTTTTGCCTACTCTCCCGTCGCCGAGGAGGACGAGCTTGAAGGAGACGCTGGGCTGCGGCGGCGGCGGCGGCTTCGAGCCCATCGGAGGCGAGGCGAGGCGAGAGGGGTTCCGCCGGAGGCTCCTACGAGCCTCTAGAAGGTTCCAGAACCTTCCGGATCGCCCGTCCCGGTGTTGCGTGTGTGCTGTGGTCAGAGAGGAGAAGTGTGGGA

Coding Potentia
Explanation CPC Score
noncoding -1.34538
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0305100.1 5 16019598 C T
Osa05LNT0305100.1 5 16019984 T C
Osa05LNT0305100.1 5 16020843 G A
Osa05LNT0305100.1 5 16021469 C T
Osa05LNT0305100.1 5 16021545 T C
Osa05LNT0305100.1 5 16021717 C A
Osa05LNT0305100.1 5 16020571 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0305100.1 osa-miR5823 Cleavage 5.0 18.172 1 24
Osa05LNT0305100.1 osa-miR1425-5p Cleavage 4.5 20.787 1 21
Osa05LNT0305100.1 osa-miR1850.2 Translation 4.5 9.063 1 21
Osa05LNT0305100.1 osa-miR2097-3p Cleavage 3.5 14.054 1 22
Osa05LNT0305100.1 osa-miR2927 Translation 5.0 18.505 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0305100.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
Osa05LNT0305100.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0305100.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus