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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0305800.1

ACCCCTTAACTCATCCCTATCATATAAACAAATAGATTACCGTTCATCCATATTTCATCTAATTCGAACGGGGAAGTCCTTTATATGTTGCAGGTTTACTCATGGTTACTCATGCCTCCTTTATATGTTGCCGGTATACTCATGGCTACTGCTGCCAGTCACCGGAATGAAGAGTTTGTCGGCTCAAGGAATGTGTTGCAGACCGGCCATGGTGCCCAAACACTGGTATTTGGTAAGGTGGCTGAAACACGGTGTTACAGTCAGGTGCTCAGGGCTCCGGCAATATGTGATTGCTGTGATCCTCTCCTGTGACACTGGCACTGCCATCAGTGACACCGTTAGGAAGGCTTGCTCTGTTAGCGATAGCTGGGCTGGAATACGGGGAGTATGAAGAAGCCGCGCTACCATTGTTGTTCCTAGTTCGTCCAGCGGTACTACTTCTTGTTGTTTTTGTGCGAGCTTTGCGTCCCTTGCCCATGCACTTCTCGAGGTGAGGGGCGAAGCGGCCGGCGGCGACGGGGCGTCCGCAGTTCATGCAGTCGACGAGGTCGGCGGCCACGGCGGGGAGCACCTGGCCAAATACATCGACCACCCCCTTGTTCCCTCCGCCACCGCCGACGGCGCCGCCGCCCTCCTCGGCCCCCGGGTGGTCGCGGGCGGCCCAGGCGCGGAGCTCCTCCTCCTCGGCGTCGACGCCGCGGTCGAGGCCCAGGCGCGCGATGCGGTGGCACTCGGAGGCCACGTCCACCACCGCGGTCTCGAGAAGCTCCTCGAAGCAGGCCAGCGCGAACTGGGAGCGAGGGCTGACAGGGGCGTCGGTGGAAGACGACATGGCCTCCTCCGGGCCCCGATCGGGGGAAAAAAACGCGGTCGGCGGAGGCGGAGGCGATGGCGCGGCCGCTCAGGGTCGATGCAGCAGGCGAGGGCGGCTGCGTGGAGTGGTCGTCGGCTCGTCGGCGCCGGCGAAGGGAGGAGGACGGCGGCGTTGAGCTGATGCCGGCGGAGGGACGACGCGGTGGCCGCGGGGAGGAGGCGAGGGCAGCCGCAATTCAGGGTCGCCGATGCCGGGGAAGGAGAAGGCGAGGTCGGCCGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.762856
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0305800.1 5 16622518 C G
Osa05LNT0305800.1 5 16622970 C T
Osa05LNT0305800.1 5 16623072 T C
Osa05LNT0305800.1 5 16624334 A G
Osa05LNT0305800.1 5 16624421 G A
Osa05LNT0305800.1 5 16624684 T C
Osa05LNT0305800.1 5 16625105 T G
Osa05LNT0305800.1 5 16625472 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0305800.1 osa-miR171i-5p Cleavage 5.0 24.544 1 21
Osa05LNT0305800.1 osa-miR528-3p Cleavage 5.0 24.328 1 21
Osa05LNT0305800.1 osa-miR5082 Cleavage 5.0 20.936 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0305800.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0305800.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus