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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0306100.2

GTGGCAAACAACAGATGTATTGAATACAGAGTGGGAGGGTGTGTCTTGAATGTAGGCATCACCCCAACTTCTGCTATTGTAAAGAGTAAGGTTAATGAAGAACCAATCAACATATTAAACTAAGATGGTGTAAGCTAAAAAAGGGAAATGGATCACATAGGTAACCATAAAAACTATTACATTTGATTGGTAATTCGCTAGTTGGAAGGTACACCAGATACAACATTGTTAGTGATGACACATCAACACTACTAAACATGATCCTGAGCTGAAGAAAATGGAAATTTCTATGGTTACCCCCTTCATCCCCCTATGTATTAATTCCTGTGGTTTAATGCCTAGCTGATTCTTGCTGCAAAATTCTGTGGTCATCTACAAAGGATCCCTTTGGTGAGAAAAACTAATGGCAAACTTTGACTTCGGTTCATGTACGATAACATTTCAGGGACAAATAGGAAAATTAACGGCACGCATATCCAAATTAGCTTTGACATAATAATCCATTCAATGCCGCATGGTACACACGCTTCTCTGCTAGCCCAAGATCAGAAAGAATCAAGTTCCCCTCCACTGCCATCAATTTCCGTACATTATTTGCGTACAGCTTAGGATCTTCCTTCTCTTGCTCAGATGGGTAATACACAGGCAAATGGATCACCTCAAGGTTATTTACAAATTGACAAAGGAGCAGAAATACATGCCGAGCCCCAGACATCGAATCCCATGCTGGACTAAATCTCTTGTAAGGATATCTTAAAATGACTGGCTTCACTGGTGCTTTTGCAAGAAATGCTCCTGTCTTGAAAGGGAGGAGATAATCACCATTTGTAGTTGTGCCTTCAGGGAAAAGTAGCATCATTGGAGAATTCTTCTGTTGATGAGCCCGTTGGATTCTCTCAGTCACAGCACCTGAAACGCCTTTGAAATCTGAGGTTTTAGATTCCCGCTGAACAAAAATGCATCCAAGACATTTGCTTATGAGACCAACCATGGGCAATCTGGCCACTTGGCAACAAAGCTTGGGAAGGAAGATGACATGTGGTAAAGAATATCCACATAAGATACATGATTAGATACTACTGCCCCTGGTCTTCCCAATTCTTTGGACTGTTCCTGATGCTCATCCTCAGCATCAGGGAAGCGGCAGTCGTACTCGCGGATCCAGTAGAAGCCGAAGACGAACAGCATGGCGCGCGCGAGCGCGCGGCCGCACCGCACGACGCCCTCACGCCTCCACCCCTCGAGCCGCGCGTACCCGTCCCCCTCCACTTCTCCAGCCGCGCCGCCACCGCCACCCTCGCGCTCCTCCTCCTCCACACGCAGCGTGCACACGCGGCACACGAGGTAGTAGGCGACGAGCACGAGCACGCCCGCGGCGAGCCGGAGCGGGAAGAGCACGGCGGCGCCCACCGCCAGCCGCCCCGCCCCCGCCGCGCCCAGGGGGCCCCGGCCCATCGCCCCGTACGCGTCCCGCCTCGCGTACGGCGCGTACCTCCGGTCGAGCTCCAGCTCCTCGACGCCCTCCTCCGTCCCCGCGGAAGGATAGGTGGACGGGGACGAGAGCAGCGGCTTCGAGGCGAGCCTCTCCTCCTCCTCCTCGCCGCCGCCGCCGAGGTCGTCGGGGTCGGAGGGGGAGGTGGTGGCGTCGTGGAGAGGGAGAGCCATGGCGGAGAGGGTGGGGGGCTTAGGGGCAAACCCTAGCAGTGGGTAGGCAT

Coding Potentia
Explanation CPC Score
noncoding -1.041
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0306100.2 5 16978617 A G
Osa05LNT0306100.2 5 16978675 A T
Osa05LNT0306100.2 5 16979213 G A
Osa05LNT0306100.2 5 16979396 T C
Osa05LNT0306100.2 5 16980442 A C
Osa05LNT0306100.2 5 16981432 G A
Osa05LNT0306100.2 5 16981476 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0306100.2 osa-miR2092-5p Cleavage 4.5 12.171 1 21
Osa05LNT0306100.2 osa-miR2863a Translation 4.5 11.382 1 21
Osa05LNT0306100.2 osa-miR3981-5p Cleavage 5.0 22.596 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0306100.2 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0306100.2 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus