\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0306200.2

GAAATGAGGTAGATATTTTAGAAAGTTGCCCACCACGTTCGAAAGTAATACTCAAGTAGAATCACATTAATTATACTGAATCAAATGCCAACATATAATAAAGGCATTGATATTTTGTGTGGTACATATACTCTTTCCATGATGCAAAGTTCAGCAATACTTTCTAGGGCTGCAATAATTGTGGGTTAACCTATGCATTGATCCTTTGTGGTTAGCTGGATGTGAAACACCTTATGTAGGAAGCTATTACACCATATTTGCATGAGAAGAGCAGCAAGTACTGCTTTTGTTTTCTTGCATTGCACTGAGCTATACTCCTATAGGATGGCCAGATTCAAAGGTATGATGTTATAATATATTGAGATTGCCAAGTTTTCAGAGTCTTCTATGCCATATGTATCAACATCACCAATGTAAGATTGTCCATAACGAACATCATCGATGCAAATGCTCTGTCATTCTCCAGAGTGGCCAAATTGAAAGGTTCGATGTGATAGTATGCCAAGATTGTCAGGTTTAATCTTTCGTGAGAACCATTGCCATCGTAAGATCATCCGCAAAGAATACCATGGATGCATATGTATTATCATCCTTTCTTTTCTTCTTCCTCCGCACACAGATCGAGCAGGCATTGTTGCATGTTTGGAGCTCGCCATTGATGGGCACGACGCATACAGCTAAGCTAGCTGTCTCCTATGTGGGCTTGAGATCTTGGAACATGGACTCCCATCGCATGTCCTCGCCGTCGTCGTATAGGTCGTCTTCGTCGTCGTTGCAGCGGTGGCAGCGGCGGCGGCCATGGCGACGGCGCGCATAGGGGAGGAGGAGGTCGAGGCGGAGGCGGTGCGTCCATGCGTGAGGCGGGGTGGCGGCGCTACGCAGGT

Coding Potentia
Explanation CPC Score
noncoding -1.33087
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0306200.2 5 16984631 C A
Osa05LNT0306200.2 5 16986168 C T
Osa05LNT0306200.2 5 16985735 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0306200.2 osa-miR5539a Cleavage 5.0 20.732 1 22
Osa05LNT0306200.2 osa-miR5539b Cleavage 5.0 20.732 1 22
Osa05LNT0306200.2 osa-miR408-3p Cleavage 5.0 18.156 1 21
Osa05LNT0306200.2 osa-miR415 Cleavage 4.0 20.732 1 21
Osa05LNT0306200.2 osa-miR820a Cleavage 5.0 22.935 1 21
Osa05LNT0306200.2 osa-miR820b Cleavage 5.0 22.935 1 21
Osa05LNT0306200.2 osa-miR820c Cleavage 5.0 22.935 1 21
Osa05LNT0306200.2 osa-miR2104 Translation 4.0 23.905 1 22
Osa05LNT0306200.2 osa-miR2864.1 Translation 5.0 17.966 1 21
Osa05LNT0306200.2 osa-miR3982-5p Translation 4.5 19.788 1 21
Osa05LNT0306200.2 osa-miR5077 Translation 5.0 18.117 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0306200.2 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0306200.2 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus