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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0306300.1

AATACAAAACAAAGCAGTATCACATACCATTGGGATTACAATACAGTTGTACAACACTTCCTATTATTACATTACATTGATCAAATAAAATAGAGAGAACCTAATACATTGCGAGTAGCTCTCCTCTCTTCATATATGCACAAAGCCACTCAAGGAACACAATGTCCTCATTTATTCGACGTGGAAGGTTGGGACACAAACACCTTTCTCCTCTACTCAGCTGGTTCCTGTTGCCCTCTCGGCAAATGCAGGAAGGCAGACATACATTATACGTACGTGCATACATAAACATGATGGGTGGCCCCCAGTTGGCCTTGAAGGCTGGAAGCAGCATTAGCGACGGCATGAACAAGGTTGCTGCATTGCATAGATTGTTCTCCTGTATTTTCTGTTCCTTGACCATGCCATGCCGTCGCTATATTAAGGTTGATAACCTCCCTTACAAGTTATCATCCTCAAATATCGTCGAGAGCACAAGCCCACGGACAAATTTACTCCTTTGAGCCCTCTCCTTCTGATCCTTCTCCGACAGAGATGGTTCAGCTCAGATACAGTGGTATTGTGGCAAAGAGGGAGCGGAGTGAGGCGGCAGAAAGAGCAAAGCTTGAGGTGACATACCTCTCTGCAGTCTTGTCATCTGGGAATTTATTTAGCAAAAAGTTATTGTCAGATGAGTCGGAATGTAAATCTTTGGATGGTTCAGCCACAGGCAAACTACAAATTAAAGATGACAAAAATGGATCTGGTGCAGCAGCAGGAGGATTAGATACATAGGATGATCCACCAAGAAAGGACTGCAGACTGCCATCTCTTAAGTCCTTTCTCAACAAAGACAACAAAGAATGGGACCCTGAAGATATTTTTCGGACTCTTCGCCTGCGTTGCATCTTAAAGTAACTTCCATGCTGCATTGTCAAGTGACCTATCAAGTCCACTCCAACCCTTGTAGCACAGATGGGACATACCCCGCTCTTGGCCTCGACGGCGTGCTCGTCGTCGACGTGGCAGCAGAAGGCGACGAAGTCGAAGTCCTCGCCGCAGAAGGGGCAGTTGTACGCCTCCCCGCCGCCGCGCGCCTCCACCTCCTCCACGCCCGCCGCGTCCGCGTCGTCGAACCCCATGTACAGATCGTAGCGCGCCTGCAGGCGCCTGGCGGCGGCGGCGGCGGAGGAGGATGAGGAGGAGGAGCGGCCCCACGCATCACCGGCGTCCATGGCAGCGGCGGGATCGAATCGAAACCCTAGCCTCGCCTCGCTTCCTTCCCCCCTTTTCCCCCTTTCGCGGTGGTGCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.742722
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0306300.1 5 16989227 G A
Osa05LNT0306300.1 5 16990667 C T
Osa05LNT0306300.1 5 16990399 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0306300.1 osa-miR417 Cleavage 5.0 20.579 1 21
Osa05LNT0306300.1 osa-miR444b.1 Cleavage 4.5 22.387 1 21
Osa05LNT0306300.1 osa-miR444c.1 Cleavage 4.5 22.387 1 21
Osa05LNT0306300.1 osa-miR5510 Cleavage 4.5 16.435 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0306300.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0306300.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus