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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0306500.1

GCCACACCAAAATACACTCAAAAACTAAGTCCTAAAATTATTAGAAATTTCGGCAGAGTCTCCCCTAAAAATACGGACATCACGACAGGCAGTTATAAGAAAGGTCAATACCGATATAAACCACACAATCCAAACCATCCTAGCTCCACAAATCCCACGTGAAAAATAAGGATCAGAACCTTAAATGACCTTTACAAGTTCTATGCAAAACTTATGCTGAGCAAAAATTATAGTCTAAAACTAATTTCAATTGTGTGCAATAATAATGTGTAGTCCAAGGGTGCTACTCCCGCCCCATGCCGATCGATGTCATTAGGTACCTTAACTCATTCGATACTCCGACTCAACTCCTCCAACGTTGGAA

Coding Potentia
Explanation CPC Score
noncoding -1.32129
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0306500.1 5 17119868 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0306500.1 osa-miR5797 Cleavage 3.5 8.633 1 21
Osa05LNT0306500.1 osa-miR2873c Cleavage 5.0 10.582 1 21
Osa05LNT0306500.1 osa-miR1866-5p Cleavage 4.5 10.059 1 24
Osa05LNT0306500.1 osa-miR2866 Translation 3.5 9.93 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0306500.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0306500.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus