>Osa05LNT0306500.2

GCCACACCAAAATACACTCAAAAACTAAGTCCTAAAATTATTAGAAATTTCGGCAGAGTCTCCCCTAAAAATACGGACATCACGACAGGCAGTTATAAGAAAGGTCAATACCGATATAAACCACACAATCCAAACCATCCTAGCTCCACAAATCCCACGTGAAAAATAAGGATCAGAACCTTAAATGACCTTTACAAGTTCTATGCAAAACTTATGCTGAGCAAAAATTATAGTCTAAAACTAATTTCAATTGTGTGCAATAATAATGTGTAGTCCAAGGGTGCTACTCCCGCCCCATGCCGATCGATGTCATTAGGTACCAAATTCCCCAAATTTCCCTTCTTCTATCAAATTTCCCCTTCTTTCCTTCCTTCCTGTTCTTCTCTGCCTTCTCTCCGTCCTTCCAACGACCGGCTGCGGACGACGACGGTTGTGGCGACCGGCGACGGCTGCACCAGCGGCGGCGCCGGCGAAGAGAGGAACAGCAGCGGCAGCGGCAGAGCGCAGGAGGTGCGGCGGCTAGGGCTACAGGAGAATCGCTCCTGTTTCT

Explanation	CPC Score
noncoding	-1.00573

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0306500.2	5	17119868	A	G
Osa05LNT0306500.2	5	17120499	G	T
Osa05LNT0306500.2	5	17121243	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0306500.2	osa-miR5797	Cleavage	3.5	8.633	1	21
Osa05LNT0306500.2	osa-miR2873c	Cleavage	5.0	10.622	1	21
Osa05LNT0306500.2	osa-miR1866-5p	Cleavage	4.5	10.059	1	24
Osa05LNT0306500.2	osa-miR1866-5p	Translation	5.0	5.966	1	24
Osa05LNT0306500.2	osa-miR2866	Translation	3.5	9.93	1	20
Osa05LNT0306500.2	osa-miR2919	Cleavage	4.0	2.868	1	19

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0306500.2	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0306500.2	5	qLTG-5	Resistance or Tolerance	Cold tolerance	RM249	RG13

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus