>Osa05LNT0306700.1

TAATTTGCCATTTCAGATTGTTGTTCTTGTGCCGCTATCACTGCTATTAGTGTCATGCACCTACTATCAACAATGAAATACTTGAATGGTGACAATCTTGCTGCTATAATTGTTGGACAGTGTAACCTGTGGGGTTTGTTTGAATATATATACTGTACCTTGCTCATATCTGATGTGCCATTGTTAAATATATAAATCCTGCTTGTGAGCAGTTAAATTATGTAATATATATATTTTTTTTTGGATGAAATCTGTATTGTGTCAGGTAACAACTAAGCCATGCAAAATGCATGAAATTGGGTGTTAGTATACTGGTACAACGTGCACAATTTTTTTTTCACAGACGAACCGGGGTCGCATCCAACGGCCCATACATACGCATACCGTCGGCACGAATCTCAAAGGACGGGTAAACCCCCCATTCTGCATCAGTCATGGAGCATCCTCTGCTTCAGCATCTCGGCGCGGAGGTCGGCGGCGTCCACCTCCTTGGTGCCGGTCACCGGCCGGTAGTAGCCGGTGTCCGGGTCCGGCTCCCAGAACGCCGTCTTCTCCTCCGTCGTGGTCGCCGTCGCCGTCGCGACGTCCTTCGCCGCCGTGCCGAGCTTCACCGCCTTGTCGTCGATGGTCTTGGCGGATCCTTCCGCCGCGGTTATCGCCGCGGACAATCCTCTCCTTTGTGCCAGCAGGGCAACACAGCTGGCTGCGACCCGCGCCATCCGATCGGGATCTGGCGGTTGATGTTGACTCAAGTCCTCTTCTCACCCGTTCTACTCCTCGTCGTTTCGGCAATTGTTCCTCTTTGGTCTCCTC

Explanation	CPC Score
noncoding	-1.21986

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0306700.1	5	17319001	A	G
Osa05LNT0306700.1	5	17319415	T	C
Osa05LNT0306700.1	5	17319534	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0306700.1	osa-miR319a-3p.2-3p	Translation	5.0	19.909	1	20
Osa05LNT0306700.1	osa-miR319b	Translation	5.0	19.909	1	20
Osa05LNT0306700.1	osa-miR166i-5p	Translation	5.0	12.641	1	21
Osa05LNT0306700.1	osa-miR1864	Translation	4.5	13.071	1	24
Osa05LNT0306700.1	osa-miR5487	Cleavage	4.5	15.207	1	21
Osa05LNT0306700.1	osa-miR2099-5p	Cleavage	5.0	15.961	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0306700.1	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0306700.1	5	qLTG-5	Resistance or Tolerance	Cold tolerance	RM249	RG13

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus