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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0307200.1

GAAAATAATCAGATACTTATTGTAGTTAAAATCCTGTGAAATGCTAGTACTGTCTTCTAATCATGCCTGAATAAAAACCCACATCAATTTAGTAGCAAGCAAATTGAAATATCACAGTGATATGATTGTGCAAGTTTCACTCGTTCCAGATTGTGATAATTAGAGGAAGCTAAGACATGAACTAGACTGCTACAATTATTCAGCTTGACAGCATGATCCTCCTAAACCTTCAGGCTTATGCAAGTTAACCTTCTTGCTTTAGTAGATAGGCTTCCTTCCAACTTCCTGCTGAGCAGTTGACAGTTGACACCACGGATCAACACACCCCAAGTACTTGTTGCAGTACCATTCTCCTACATGTCGTCATGAGGAGGGAGCTTACTGTTACTGAACTCCTTGTCACTCTCGACATGAGACGGCTCCTCGCCGTGCTGCTTGGACTTGCCAGAGAAGACGTTGTGAACAAAGCCACCAATGCTGTCGTCGTCGCCGTTGGCCTCTGCCCGGTGTCTCGCGTTCGCGGCGATGCGGTCCAGCATCCGGCTCCCCTCCTCGTCAACCTTCTCCCAGTAACCCGTCGGCTTCTCACCCTCGCCGTCGTCGGTGCCTTGCCTGAGCAGGTCGGCGATGAACTCGTACGCGTCGCTGCCGAACTTGACGCTGTCGTCGCCGAAGGGGATACGGTGGCCGCCGCCGCCGCCCGCCGCCGAGGCTGAGGACGACGACGACTCGGCGTCGGCGGCCAAGCGGTCGAGCCACCGGCTCTCCTCGTCGTCGGCCACGCTCCACGAGGCCTTGACGTTGCCATGGCCAGGCAGGTTGAACTCGAACGTCCCTCCCGGCTGCTGCTGCTGCTGCTGGTGGCGCTCCTCCTCACCCGCCGCCGCCGCCGCCGCCACCACCACCACCGCCACGGCGGCGGCGGCGGCGAGGAGCAGGAGGCCGCGGGCGCGGCTGCGCCTTGCGCCGCGGCGAGCTGCCGGTCGAGCCATCCACTATTGCAGTCACAGCTTTCTTAATTTACTCTGTTGCTTACTACAAAATCAATCGCAACAATGCTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.704641
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0307200.1 5 17623287 T C
Osa05LNT0307200.1 5 17623296 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0307200.1 osa-miR1440b Cleavage 4.5 14.903 1 21
Osa05LNT0307200.1 osa-miR396c-3p Cleavage 5.0 7.998 1 21
Osa05LNT0307200.1 osa-miR167d-3p Cleavage 4.5 13.019 1 22
Osa05LNT0307200.1 osa-miR166h-5p Translation 4.5 21.753 1 21
Osa05LNT0307200.1 osa-miR2275a Cleavage 4.5 12.269 1 22
Osa05LNT0307200.1 osa-miR2275b Cleavage 4.5 12.269 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0307200.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0307200.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus