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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0308600.2

GCTTCCTCGCAGATCTAATTGGCGCTGCTGCCTCCCCACGGAGCTCCATCTCGCGAAGCTACTTGGCGCCGCCACCGCGGTGTTCCGCCCCGTCGAGCTCGCGGGGCTGGCCGGCGCCCTTGCCACCTTGCCGTCCAGCTCGCAGAGCTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGGCCTCGCGGAACCAGCCGGCGCCATCGCCACCTTTCTGTCTGGCTGCTCAGCGGCGCCGCCCCCGCGGTATTGCACCCCGTCGAGCTCGCGCAGCTGGCCGGCGCCATTGCCACCTTGCCGTCCAGCTCGCAGAACTGCTCGGCGCTGCAGCGGCGTTCCATCCCGTCGAGCTCGCGGAACCAGCCGGCGCCATCGCCACCTTGCTGTCCGGTTGCTCAGCTTTCCTCTCCTCTTCAGTGCTGCTTGGAGATTAGGATCACAGATGTTTGAGCAAGCAGTAAATCGACAGAAGGTGCTCACTTTCTGGACTTAATTTGTTTTTGTCATAGATCACGAACACACTGAGAGATATAAATACGAGGGTTCGTATGGCTGTTAATCTGGTGCTTCCTTATATCTTTTTGCAGTGTTCTAGATCTTGTAGGAGCATGCAGCTTGTAAGTGCAAACATTTTGCATTATATCATACTGTTAAGGAGAAGGCAAAAAGCTATCTAAAGTGATCATCATGTATTTCATGTTTCCATCAGCCAGGTGCCCAGGTGTTTTGCCAGAGGACATATCAGGACACATGTGTGCTCTGTTATATAACTTTTGACTTAAAGGAGTTGTGCTACAAGATAAATCGTTTGTCTCATCTGTATGCCTTCGATGCCTATTATGTGAGTCTTAACTATTTGAATTACCAACTGACCACCCTCGTCGATTCTCTTGTCTAATAAAATAGTGTATTTTACATATATTATATGGCTTAGTGAACTTTCAGTATAATTTTTGTTGTCATCAGAAATATTGAAACATATATATTCATATTCATACTAATGAGACTACATTTTGTTATCATA

Coding Potentia
Explanation CPC Score
noncoding -1.0074
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0308600.2 5 19337975 A G
Osa05LNT0308600.2 5 19338153 T C
Osa05LNT0308600.2 5 19337361 G A
Osa05LNT0308600.2 5 19337689 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0308600.2 osa-miR5836 Cleavage 4.0 19.021 1 21
Osa05LNT0308600.2 osa-miR6253 Cleavage 4.0 17.869 1 22
Osa05LNT0308600.2 osa-miR1437b-5p Translation 5.0 17.999 1 21
Osa05LNT0308600.2 osa-miR5522 Translation 5.0 11.954 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0308600.2 5 dcs5 Physiological trait Source activity RM440 RM430
Osa05LNT0308600.2 5 dcfs5 Physiological trait Source activity RM440 RM430
Osa05LNT0308600.2 5 nan Morphological trait Seed RG13 RG573
Osa05LNT0308600.2 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0308600.2 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0308600.2 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0308600.2 5 nan Physiological trait Eating quality RM163 RM31
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus