Transcript

Sequence

>Osa05LNT0309300.1

GACCGATCAGCGCGCGGGGACGCCGCCGGGAGAGAGGGTGGAAGCCACCACGCTTCACCCAACCCCACCCTCCTCCTCCACCACCGTTTAACCGCTTCGTAGGCTACGACCCAACCCAAACCCAAGCGAGCTCGCGATCGCGTCGCGCGCGCCATGGGGACGGAGGTGCTCCGCCTGCACGACTGCCTCGACCGCGTCCGCGCCCGTCCCCACGCCACCAGGCGGTCTCCGCGCCAGCAGGCGGCCCGGCGGCGCGACGCGCGGCCGCGGGGCGGGC

Coding Potentia

Explanation	CPC Score
noncoding	-1.33484

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0309300.1	5	19740107	C	T

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0309300.1	5	dcs5	Physiological trait	Source activity	RM440	RM430
Osa05LNT0309300.1	5	dcfs5	Physiological trait	Source activity	RM440	RM430
Osa05LNT0309300.1	5	nan	Morphological trait	Seed	RG13	RG573
Osa05LNT0309300.1	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0309300.1	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0309300.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0309300.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0309300.1	5	nan	Physiological trait	Eating quality	RM163	RM31

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus