\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0310700.1

CATACTAGCCAGTGGCGGCCCAGGATTTACAGGTTGGGTATTCGAAATGTAAGGGTAAAAAAAAAATCACCCAAAAAAGCCTATAATTGGCTTGTATAACATCAAACACTAGTATTTGTACTATATATAACATATACTCCGTATAACACAAAATAGAGCCAAAGTTCATATTTTCGTAGAATTGATCACAACTCAAAATTGTTTAACATATCTAAGTGCTAATGGTTAATCATATCAAAGTGACAACATATAAAACATATAAATGATTAGAAATCTTACAATTTAGAGGACAATTTTGCAATGCTTGATGTCATTGCAGGACAATACTGAGCAAGCTGCCCTAAGAAGTCCCCAGGAAATACTGCCAATTGACTGGGACTTGGAGGGGTTAAACAACAGGTAAAGGGCCAAAACAACAGTACGAATATTAGCAGAGTGTTAATACACCAAAGAATTGGATGAAGCTGCTTACAGAAGCAGTGCCGCAGTGAGATCGAGTAGTGTGGCTCAGTCGGTCAGTCCCGCATTGTACTTGGTGAAGTTTCCACTCGCAGTATCAAATGCAACATCAGTACCAACAGCAAAAGCCCCAGTTCCAAACACACCAGAAAAGCTAAAAACTAACTAGAGGATTTGCATTCTGGACAACACTAGCATTCACGCCAGCATGTGGATGCAAGTACTGGACTTCAGCCTTTGCAGACTTCTGGTAGGGGAAAGGAATGGATTATAGATAGAATTCCCTTCAGGCCGGGAGTGCCCAGATCATGAACTGTGAATGTAGTCATCAACTGGCAAAAGAGACAATTAATAACTAATCAGTCACTGCTACAGAAGTCTCGGCGGACGGCGGCTCGGCGCCTAGCCGCCCAACAGGCCACAGCCCCCTGCGGCAGTGCGGCGCCGCCAGTCGTTCGAGCCGGCGACGCGCCGCTCGGCCGCCGGCCGCCCTGGCAGATGCTGCGCCGGCGCGCC

Coding Potentia
Explanation CPC Score
noncoding -1.26074
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0310700.1 osa-miR171a Cleavage 5.0 23.195 1 21
Osa05LNT0310700.1 osa-miR159a.1 Cleavage 5.0 19.189 1 21
Osa05LNT0310700.1 osa-miR159b Cleavage 5.0 19.189 1 21
Osa05LNT0310700.1 osa-miR159f Cleavage 4.5 19.189 1 21
Osa05LNT0310700.1 osa-miR1441 Translation 4.5 23.006 1 21
Osa05LNT0310700.1 osa-miR2869 Translation 5.0 16.678 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0310700.1 5 nan Morphological trait Seed RG13 RG573
Osa05LNT0310700.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0310700.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0310700.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0310700.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0310700.1 5 nan Physiological trait Eating quality RM163 RM31
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus