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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0311200.1

ACAGGAAATGTCAAGGACGCTCTAAACTAGAGATCCACACATGATATTGTAGCAACCTACAAAGATCTTGGTACAAATCAGCTCAGTTCATTTACATTCAAATAACTACCTACTACCACACTACATTTCCTCTAGACAGAGGGGGCCATATTGCCAATTCATTTTGCATCCTCCTACATCTGAAAGTTCGTGCTGTGACGGTTGCTACAAAGGGCACTGTAATTGTTGTGTGTGGTACTATGAACAAAGAGCAGCTATTAACATCTAAGAATATCTGAGATCTCCATTGCTCATGTTGGGGGTCTCTCCAGGGCCACGCAGCCAAATTTGCCTTTCCGGTAGTCAGACAAGATGCGGAAGGCTGCTTGGCTGGCATCTCCATTGAACAAGTGAACAGAGAGCTTTGTCACAAACATTTTACCACAATCGCTGTCCATGTCAAGCCTATAGCGTCTTCGAAACGCTTCAGGGCCTACAGCTGGATGTCTCACTAATAACTGTACGAGAATCGCTGCCACATCAGCAAAGTCATACGACCTTTCTCCTATATCATCACATATAGCAAGTTTGATTGCAGCTGTCTGGTCACTTATTCGCATTGGCAAAATGCCAGGTGAATCTAATAGCTCTAAATCACTTCCAAAACGAACCCACTTCAGCTCTCTTGTAACACCTGGTCTAGGCGCTGCTGGACACATTCTTCGTTTTAGCAAGCGATTAATTAAGGAAGATTTGCCAACATTTGGATATCCAACTATTCCAGCTCGAACCGCACGAGGAAGTAACCCCTTCTCTCTGCGCTTTGTGTTCACAGTAGATGCTAGTGATTTTGCCATCCTACCTAATTTCATTGTACCCATGCCCAGCTGCCCGTTTGAGTAAACAACTTTGGTACCCTGATTAGCAAAGTAAGAGGCCCATGCATTTCTGTCCTCATTTGACACCATGTCTTCGCGATTCATGACTATGATCCTTTTCCGATTGCCTAGCCAGGCATCCATCTTAGGATGGCTGGTTGCCAAGGGAATCCTTGCGTCGCGGACCTCTATGACAACATCCATAAGCTTTAGCTGTTCTTTCAGTTCCTTCTCCGTTTTCGCAATATGACCAGGATACCACTTATATATACCTGCACTGGGCGCAGGGATCTGGTCCAGTAGCGCAAATCCGCATCCAAGTTGTCCCAGAACATCTCTTTGTCGTAATCTTCGTTAGCATATAGCGAGTGGCTTAACCTCTCTTTCTCATACAATCCCAGCAGCGTGTCACCAGAAATCGAGGAGGATTCGCTAGCCACCCTGAGAAGGAACCGCCCGGGAGGCCTCCTGGAGAGCAAAGGCGCCGCCGCCTTAACCCTCCCCGGCGCCGGCGCCGGCGAGAAGGAGGCGGTGGGCGGAGCCAAGGAAGCGGCTGCCATGGCGAGGGGGGGAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.876216
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0311200.1 5 21128147 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0311200.1 osa-miR395w Cleavage 5.0 20.515 1 22
Osa05LNT0311200.1 osa-miR1442 Cleavage 4.5 14.768 1 20
Osa05LNT0311200.1 osa-miR1862f Cleavage 4.0 11.162 1 20
Osa05LNT0311200.1 osa-miR1862g Cleavage 4.0 11.162 1 20
Osa05LNT0311200.1 osa-miR5080 Cleavage 4.5 15.734 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0311200.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0311200.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0311200.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0311200.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0311200.1 5 nan Morphological trait Seed RG13 RG573
Osa05LNT0311200.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0311200.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0311200.1 5 nan Physiological trait Eating quality RM163 RM31
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus