>Osa05LNT0311500.1

GGACAGGTAAGATGTGAACAATCAAAATTCCAAACTGCCAGAATCGCAAGCATTCCCTATACAGCAGTCGGCCGGCAGCAAACTATGTCAATCCACAGTACATAGAGCGTTCAACAGCATGAATGGAAGGCAAATGCAACCAACCACAGCTACCACCACACTCGCACAAAATTTACGCACCAACCGATCAACACGAATAGCACAACCAGAGCAAACGACACGGACAAAAAAAAAACAGGTTACAGCGCTAGCTAGAGCCCTGATGAGGCCATCGATCAAGTGAGACCTATCTCAAGCTCTCGTGCAATCTGGATGGCGTACTGGCAGCTGTGGTGGTGTTGCCCTCGTCGCCCGACTCCGTCACCGGCTTCGCATATGTTCTTGTTCTGTCCAGTGGGCTCGCCCGCGGAGTCCGACGATCTTCTCGGTATGGGAAGTCATCGACTTCGAGCATATGGATGACATGCCCCATCTTTGGCCGCTTCTGCGAGTCGGGATCCACACACCTCAGAGCAACCAAGAGAGCCTTCTTCAGTGCCTTGGAGGTAGGCTTCTCTGGCAATTTTGGGTCCAGAACAGCTTCATAGTCCCGGTTGCTCACCATATTCTTGAGCCACTCTACTAGGTTAACCTCTCCTGGAGCCCTTGCGTAATCGACCGGGCTTCGACCGGAGATGATTTCCATTATCAGGATCCCGAAGCTGTACACATCGCTTCTCTCATTCAGCATCCCGGTGCTCGCGTACTCCGGTGCTACATAACCAAATGTTCCCATGACTCTCGTGGTAACATAGTTGTTGTCTGAACCGAGGAGCTTGGCGAGGCCAAAGTCCGAGACCTTGGGGTTCCATCTCTTGTCCAGCAGTATGTTGCTCGACTTGATGTCCCGGTGCACCACCTTCGGCTCCAGCCCCTCGTGCAAATATGTGATCCCTTTCGCTGTCCCAAGCACGATGTTCATCCTGATGTCCCAAGACAGAGGGCTAACCGGTCCAACGTCGCCATGAAGCCACTGCTCCAAGTTGCCATTGTCCACGTACTCATACACAAGTATCCGGTGAGCTCCCTCCGCGCAGTAGCCGAGCAACCTGACGAGATTCTTGTGGCGGACGCGGCCGATTGCCTCCACCTCCACCTTGAACTCCCTCTCCGCCTGACCCCTGTTGTTGAGGAGATTCTTGACGGCGACCTCGCAGCCGTCGGCGAGGACGCCGCGGTAGACGATGCCGTAGCCGCCCTCGCCGACGACATGCTCGGGTGCGAAGGCGGCGGTGGCCTCCTCCAGCTCACGGAGCGTGTACCAGTGGCCCCACCCGAGGTGCGACACCTCGGGCCCCACCCCCACCCCCACCGCCGCCTGCGCCGACGCCGCCAGGTCGGACGCCACCGGGCCCACCTCACCGTCGGCGTACGCCACCATGCGGCGGCCCTTGCCGGCCTCGATGTGCACGCGCTGCGACCCGTACACGGTGGAGCCACCCAGCGAGTCACCGTCGACCACCGCGCCGCCGACGCCGCCGCCTTCCTTGAGGAACGTGGCGCCGGCCTCGAGGTAGTGGCGGAGGGAGCCGACGTGGACGGCCACCTCCTGGATCTCCTTCGACACGGGCGGGATGGTGGCCGGCGACAGCGGCACCGCCGCGCCCCCCGGCGCCGCCGCCGCCGCCGCGGCGGAGGACGCCCGCTTCGCGGCCGGCTTCCGCCGCCGGGCCTGCGCGAGGTGGAACGAGATGACTGCGAGGAGCAGCAGGAACGCGGCCCCCACCGCGATGCCGACGAGCACCCACAGCCGCAGCCCCAGCACCGCCGTCCTCCTCGACAGCTCGTTCCTCAGCACCGGCGGCGCCCTCGCCGCCGCCGGCGGCGGCGACATTGCCGCTCCCGCACTCGCACACCTCCTCACTCTAGCTACTAGCTAGCTACCACTGCATGGTAGTACTGCCACGAGCAGCTCACACTGCAGCAGCAGCA

Explanation	CPC Score
noncoding (weak)	-0.151052

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0311500.1	5	21344475	T	C
Osa05LNT0311500.1	5	21345358	C	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0311500.1	osa-miR5836	Translation	4.5	19.607	1	21
Osa05LNT0311500.1	osa-miR535-5p	Cleavage	5.0	16.738	1	21
Osa05LNT0311500.1	osa-miR3980a-5p	Cleavage	4.5	21.688	1	21
Osa05LNT0311500.1	osa-miR3980b-5p	Cleavage	4.5	21.688	1	21
Osa05LNT0311500.1	osa-miR5083	Cleavage	4.5	21.311	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0311500.1	5	nan	Morphological trait	Seed	RG13	RG573
Osa05LNT0311500.1	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0311500.1	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0311500.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0311500.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0311500.1	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0311500.1	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0311500.1	5	nan	Physiological trait	Eating quality	RM305	RM178

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus