\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa05LNT0312100.1

GGAGAAAGGACAAGTCAATTTTTTCCTACTGGAAGTGATCCACAATAATACCATTACACACAACTTCTGATAACATGTCATCGTTGGAAGTTGGACCTGCTGTGAATTGAACAAACGCAATTTGAAATGCTGAACAGGACTACGACAATTATTGTCACAACTCATATGACACGGTCCCATCAAAAGACTAATACAAAGATATGGCCATTTTTTGGATAGCGAAAACTAACTGAACAGCGAGTCCACTTTGAAATCAGCAAATGTGCCCACAGAAGCATAAAAAGAGCGACCTAGTAGAGTTCTTCCTCCTTGTGGGTGTGAATGACGCAATCCGCCTTAGGGTACGAAATGCATGTCAGAACGTATCCCTCGCCCATCTGGTTCTCGTCGAGGAAGGATCCTTCCGACTGATCAACTTCTCCCGATGACATCTTACCCGCACATGTGGAGCATGATCCAGCACGGCATGAGAATGGCAGCTCCACCCCGGCAGTTTCAGCGGCCTCGAGAATGTAGGTATCTTCAGGGGCTTCAAACTCGTGCTCGACACCGTCCGGGCCTATAAGCTTTACCTTGTGCACCGCTGTCGCGGACACCCTGAACTTGTTGGAGATCCTTAGGCCTGACATGTTCAATGTTTGCTTTGCGTAACCAATGAAGGAAGGGCTCTTGGTCGCCGGAGCAATGGCCGCGCCGGGTTTAGGAAAGCACAATCTCGGAGCAGTTGCAGTTGCCATCTCGATAGTCCTTCTCTCTCTCTCTCTCTCGACGAGACGGCGGCGGAGGAGGGGGGGATCGCGAGGTAGGTTGGGTTGGGTCAAGCCGAGTCGAGTGAGATGGG

Coding Potentia
Explanation CPC Score
noncoding -1.39897
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0312100.1 5 21705896 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0312100.1 osa-miR5818 Translation 5.0 22.649 1 21
Osa05LNT0312100.1 osa-miR7692-5p Cleavage 4.5 10.258 1 24
Osa05LNT0312100.1 osa-miR439a Translation 5.0 16.126 1 21
Osa05LNT0312100.1 osa-miR439b Translation 5.0 16.126 1 21
Osa05LNT0312100.1 osa-miR439c Translation 5.0 16.126 1 21
Osa05LNT0312100.1 osa-miR439d Translation 5.0 16.126 1 21
Osa05LNT0312100.1 osa-miR439e Translation 5.0 16.126 1 21
Osa05LNT0312100.1 osa-miR439f Translation 5.0 16.126 1 21
Osa05LNT0312100.1 osa-miR439g Translation 5.0 16.126 1 21
Osa05LNT0312100.1 osa-miR439h Translation 5.0 16.126 1 21
Osa05LNT0312100.1 osa-miR439i Translation 5.0 16.126 1 21
Osa05LNT0312100.1 osa-miR444a-5p Cleavage 4.5 24.81 1 21
Osa05LNT0312100.1 osa-miR1849 Cleavage 5.0 21.634 1 21
Osa05LNT0312100.1 osa-miR5523 Translation 4.5 17.18 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0312100.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0312100.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0312100.1 5 nan Physiological trait Eating quality RM163 RM31
Osa05LNT0312100.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0312100.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0312100.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0312100.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus