>Osa05LNT0312200.1

GGTCATAAATTTTATGTAGGAACTCTCGTACAGGGCTTCCATGCATGACCGCGGCAATCTTGTTGATTCTTGTGAAGTATTCTTCTCAAGATCCATAACAGAAAGAAAGGAATTCCTGCGGACTCGGGCCGATCGCTTCTTTTTAATACCACAAGCTTGGTAAACTGCTAGCATCTCAGCTGCAGTTCTCATGATAATGGAGCTCTGTGTGCCAGCTAGGGAGGACTCACCTCCATAATGTCGTTTTTGGTTCTTGTCCATTTTTGATACCTTAGTCATACGGCCCTTTGTGGAGTCCATTTCTGGTAACAAACTAGCCGAGCAATACATCTGAAAACCATTTGTGTTAGAATAGTTCAGGTCTAAGTCCTTTTTGTTCTGTTTCGTTGTGATCAGACCACTCCTTTCGTTGTGATCATGAATGTGTCTCACATCATCTTGTTTCCTTGCTAGTTCCTCGCTAACATGACCAGAAGTAGCCAGTGGGATTTCCTCTGAAGGTTTTGGTGCGGCCTCTGGCAAATGTATGTACTCATCTAAAATTTTGTTCAGTTTGGAGTTGATGCCAAAAAACAACCCTTCTGGTGAATTTTCCATGTGTAATTCCTGCCCATGTTCAACCTGCACGGATGATTTAGTCACTGAGCACAAAGAACTCTCAGCATTTACAGGTTTCTCCTGGTTTCGGTACCATGAATTGGTCCTTGATGATTGGTCCCTCTGCACCCCATGCTCCCCGAACTCAAATTGCAGCCTTCTTCGAACTGATGCAATGCTGCTTCTAACAGTAGTTCTGGATTCTCTAGAAATTGAATGGTCACTAAAAGGCTCTGCGCACTTCTCCAAAGAACTGGGGTTTCTATTCTTCCACACATATTTTCTTTTGGGTTTCTGATTGAGAGGTTTTTCTTTTGATGTCGTGGACATTTGCTTTTTGGCTGGCCTGTCCTCACGGATTACCTTGGGCCTGTGCTTTCTCCTTCGAGTCTTCAGCTTTTGTGCTGGGGCATCCTCACTCTTGAATGCTTCAGTTCTCTCAGCATCTGCAATCTGCATCTCTATCTGAGTTAGTGTTTTTTCCTTGCATGCAGATACAGCTTGTGTTGGTAAGTCCATTTTGTCACTGTGAGTGATTTGTGTCCTGGCCCTTTTAGCTTTCTGATGGTACTTGTGAATGTTATCATCAGTGGAACCCTCTGCAACCAAGCCAATTGATTCTTGAGGATTTTGACCCTGAATTTTCTCCATAACCGATTCCAACTTACTGTGGCTGTCACAGATAACAGCTTCCGCTGATTGTTGCAGTTGGCTAGCTTCTCTTTCACTTTCAGTGTTGGAAGCTTCAGTGTATAAACCATTTGGCTGAAGAAGCATAGGTGCATGCTCTGAATTGTACCCATATGAAATGGCCGGTTCTGAATGATTCATTGCCAAATCACCTGCAAAAACTTCAGATGGACCTCCAAGCGACAAGAAATCACTTTGAGGAATCGGCCCAGAAGCTCCATCCTCTGAAACACCGGACAGTGCAGGAGCCGGCATAAAGCTCCGACGCCTGGATCCCCTCCCCGTCAGCCTCCTGTGGAACACCAGGATACTTATCGGCACCTGCGTGCATCCTGCAGGAAGGTTGTAGGATGGCCGTACGGGGGGCCCACCATGCTGCTCATCGGCGCTGCTCCCGGAACCCGCCACCAGGGCTGCCTGTGGAAAGGAGCCCTCGTGCATGGCGTTCAGCAACGCCGTCGACGACAGGGAGGATCCCGGGAACAATGTCAATGGCGGGCAGCTCCGGCCTGCCACGGCCGTCCCAACACCCAAATTTGGGGTGCCCCTCCCAACTGACACGCCGGAGGTCCAGCTCTCCTGGTTCTCAGCAGGATTCCCCTGCAGGTTGAGCCCTGAGGGATCCATGGCTGCTTCTTCCACAACCTAACGTGGATTGCCGGGGTTCAACTGAACCCCTAAATTTTTTTTCGATTCGAACCGAAACGGAGGCAGATGGAAGGAGGTTGGCCGCGTCGATCGATCCCCCACCAAACCTCCTCGCCGGCTGTGCGCACGCCGGCGCCAGGCCACACTGGCCACGGAGGAGGAGGCTACGGGCGGAATCGGGAAGGGGAGGACGCCGTACACACCGCCGCCTGCGCCTTCTCGCCGAGGCGACGCCTACCTGCAGCTCGCACTGACCATTGGA

Explanation	CPC Score
noncoding (weak)	-0.8635

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0312200.1	5	21895105	G	C
Osa05LNT0312200.1	5	21895306	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0312200.1	osa-miR5818	Cleavage	5.0	21.341	1	21
Osa05LNT0312200.1	osa-miR5823	Cleavage	5.0	11.2	1	24
Osa05LNT0312200.1	osa-miR5828	Cleavage	3.0	16.947	1	21
Osa05LNT0312200.1	osa-miR5828	Translation	5.0	19.26	1	21
Osa05LNT0312200.1	osa-miR395u	Cleavage	5.0	23.112	1	21
Osa05LNT0312200.1	osa-miR535-5p	Cleavage	4.5	13.488	1	21
Osa05LNT0312200.1	osa-miR1852	Translation	4.0	18.239	1	21
Osa05LNT0312200.1	osa-miR1855	Cleavage	4.5	20.516	1	21
Osa05LNT0312200.1	osa-miR2093-5p	Translation	4.5	13.662	1	20
Osa05LNT0312200.1	osa-miR2100-5p	Cleavage	4.5	20.938	1	22
Osa05LNT0312200.1	osa-miR1863b	Translation	5.0	21.21	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0312200.1	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0312200.1	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0312200.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0312200.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0312200.1	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0312200.1	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0312200.1	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus