>Osa05LNT0312300.2

GAGCAAAAGCTTCCATGTTAAGTTTTATTGTTGGGATTTCATCAGTATCTTCATCAAAATCTTCAATATCATTCTCTAAAAGTTCTCGGCATTCTTCCTCTCTTGGACTTGCTGGCTCCTCAATTATTGGATTTGTGTTGTTAGCATGAACATCCCTTGCATGGATACTCCCCTCGAGCTGAAGCAGAGGAGTTGAATGTGGTGTGGGCATTGTACCATTCTGGAAATCAAATTGATTGCTCATATTCACCAACCTTTTGTCCTGAGGAGAAGGAAGTGCAAGTCTTGCACTTGCAAAGGCACTTGCAAAATGCTTGCATTCACTCCTCATTGGACATGCATTGCAATTCGGCTTGCTTTTGGTACAGAACACCTGTGAAAACCATGAAACTCTGTTAATAATTCCTTATAGTTATAAATTATGTTATTTACTCCTTATTGCCTTAATTATTCATGATTCCAAATACTGTAATTTGCAGTGTTTGTTGATCAAGTTTACACAGACGAGGCCAGAGGTACTTTTGTATAGTCTCCAAGACAGGGTATAGCTCCAGAAGGTGTAACTGAAGAGATTCAGGGAGGGGTTGAATTGGCACCCATCCCAATCGTACACATATACGACCAACATTAGTATCAACTGGGAATGCAAGATGATGTAATGTCAAAAGGCGGACGCACTCAACACTTTTGAGCCCCAATCCGCGTATACTAAGCAGATAATCCCTGGATACGCTCTGCTAAGACATTATTCATTCCTCGTTCTCGAATGGCATGAGAAATTCTTTGTACATCTGCACACCTTACTGCTTCCCAATCAACAGAATCTCTTCGGTCAAAAATTCTTTCTTTCATCTGATAATTACCACAAGCCTGTCTTCGCAATTTATCCCAGTCAAAATTCTCACTGTTCTTTTTACTTGTGGTTCTTGGTTTCTTTGGTTTTGATGCCTGTGCTGCTGTATCTGGCAATCCATTGAAGGAAGCAAAACCAGATTTTAAGGTTGAATCATCAGCTTTGGTGGCTGTTTCGGGTATCGCTCCACCAGTGGCATATAGTGATTCATGGTCCTGAAACTCTGATGCTTCATAACAACTCCTTTTGCAACAATGTAATAATTTGACTGGAAGCTCTGTGCTTGCCAGTGCCGAGCTAACATTTGTGCCAGCAATCATATTTCCATTCATCTGCGCTAGATGAGCATCAAATGGCATGAAAAAAGAACTGTTCTCCTCAATTGTGCCAATTTTAAAGTTTGATGATGCAGAACCTATAGAACTATTAGGAGAGGTAGAAGAAACATGTATGTCGTTCCTCTCATCTAGTTGATGACAATCAGTAGCTGAGAAAAATGGATACATGTTGGAACCAGAAGGAATCCGAGGTTCATCTACAACATAATTATTTGTTGCTGCTGCTTTGATTCCGTGGTACTCAGTTTCATTGGCTGTGACATCATTTCCTGTTAATGATTTTCCATCATCAAAATTGCTTCCCACCTGCTGAGAAGCTGTGTCACTAATGCCACCAACAAAATTTCTAGGAGCATGATCCATCCCAGAACTCAAAGGTAATCCTGGTTGAAGAATTGACTCTGAAGTTACAACACTTTGGGATAATGATATCTCCGTCTGGAACTGTGTCGCATGTAGATTTTTCATACGTGCTGTTAATTCTACTAAGGAGATATCTGAAATTGATTTTGCTTTATGATCTATTCTTGTCTCGTGGTCACAAAGACTTCCAGCTGGTTCTTTACAATGAAGAGAATAATTTTCGCCTTTAGTTAACTCATTAACAGTAGCATTGCCCTTTGGTTCCATGTGGATCTTCTCACAGGCCATTGAGAGCTCCTCAAAATTTAATCCTATATCTGGTCTTGACCCATCATAAAAGAATTCAAATGTGCCTCTGTCTCTTACTGCACTCGTGCTAATGATTTCTTCATTGTCCTGACCAGCAATGCCATCATTACAATTGCCATCTGACCCTGGAGGAAAACTTGCGGCAAGGGCCATGTATGCAGAGCTGGAAAGATGATCCGCTACATTCTGCGTGAGGAAAACTCCTACTACAGAGTCCACTACTGATCCTTTCCAAGGAGAAAAGCGCCTGTCACCTGATAAACAGGCAAATGCAAGGT

Explanation	CPC Score
noncoding (weak)	-0.942054

Transcript ID	Chromosome	Locus	Ref	Alt
Osa05LNT0312300.2	5	21890942	A	G
Osa05LNT0312300.2	5	21892260	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0312300.2	osa-miR1440b	Cleavage	4.5	3.628	1	21
Osa05LNT0312300.2	osa-miR1435	Translation	5.0	21.349	1	20
Osa05LNT0312300.2	osa-miR1441	Translation	5.0	14.308	1	21
Osa05LNT0312300.2	osa-miR1855	Translation	5.0	23.521	1	21
Osa05LNT0312300.2	osa-miR1857-3p	Translation	5.0	14.677	1	21
Osa05LNT0312300.2	osa-miR5489	Cleavage	4.0	13.808	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0312300.2	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0312300.2	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0312300.2	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0312300.2	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0312300.2	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0312300.2	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0312300.2	5	nan	Physiological trait	Eating quality	RM163	RM31

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus