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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0312400.1

CAGTAGTAGCAGGAAGTTTCACATCCTATCTAATTTCAAAATATGGTATAAAATAATATTTGCAGATTTAAACATTTTTTTTGTCCAGAATACATGAATCCCCAGCTGTCCAGAATACATGAATCCCCGGAATATAAATCTGATTGTTCTAATTGGTCCTCTGTGACCCTTATACATGTGACACATCCTTTTTTCTTTCATCCCAAATCCTAGCTAAGATCTGTATCTAAATAACAAGATGCACGGGCATATTACTACGTTGTTGACCAGGGGATCATCCTCCAAGCATATGACTTCAACAGTCCAAGATTTTCATTGTCAGCTGTCTCATTAAATGGGAGGCAGTGAGGTATGACAAACGATTGTACATGCTCATTTTCTGGATATTCCTCCTTTTGTTGCTTGTACACACAGGCCTTCATTTTCCTTGCCTCCTTTTTCTTTGGGCTCATTGATGCGTACCTCTCTCTAGCACGCTTCCTTCTTAATTCTCTCTCTAGCACGCTTCCTTCTTAATTCTCTCTCTAGCACGCTTCCTTCTTAATTCTAATGCGTTGAGATAAGCACCATCTTCTTGCATTTTGTGCACACTTGCAAATTATGTTAACTCTAATAGGTAGAAAATGGAAAATCATAACTTGCATCTTTTACATTTCGCATTTATACTTCGCATATTTTCCTTTTGCGGCACATTGGAGGATGTGCATCTGTCACTGCCATGGTCTATTCGTGAATCCCCTGCATTTGCATTAGTAATATCGGCAAAAGGGGTTGATGTTGTTAACAATGTTGGTGTGGAGACCCCAATACTGTTACGATTTTTTGGTGAATCCCCGACACTTGCATTAGTAATATCAGCAAAAGCGCCCGAGGGAGGAAATATGATCTTGTTAACGATGTTGGTGTGGAGACCCCAATATTGTTATCCATGTCTTAATGTGTGTAAGCCAGCTGAACAATCCTCACAACATGCTGTTCGCCCGTGGATCGATAGCGGCGCGGTGGAGAGGGAAGGGAGGGCTCCGGCGTCCAGGGACGGCG

Coding Potentia
Explanation CPC Score
noncoding -1.21273
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0312400.1 5 22035185 T A
Osa05LNT0312400.1 5 22036836 G A
Osa05LNT0312400.1 5 22037626 T C
Osa05LNT0312400.1 5 22038044 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0312400.1 osa-miR5804 Translation 3.0 10.867 1 21
Osa05LNT0312400.1 osa-miR1865-5p Translation 5.0 15.37 1 24
Osa05LNT0312400.1 osa-miR2118a Cleavage 4.5 20.418 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0312400.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0312400.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0312400.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0312400.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0312400.1 5 nan Physiological trait Eating quality RM163 RM31
Osa05LNT0312400.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0312400.1 5 nan Physiological trait Eating quality RM305 RM178
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus