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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0312600.1

ATCTGGCAATGACCCATTTTCCATAGACACACGGAAAATATCCTTACAGCAAAGAGAAAAAACTGACAGAACTGGTACTCTATCCACTTACACGGTTACACCAATCATTCATGATACTGAGTTTTGAGTATGAACAGTGAAGTTGCATACGACAAGTTCACATAAAACACGATGAAGAGCAGGACAGATTCATGCCTTATAAACCTTGCAGTTGCAGCGCTTTCATTTCTCTACCTTTCTCTGAGTTCCTCCGATATACAGAAGTGGCTGCTCTATGTGCTCTTTATTCTCTTCAGATGATTTATAAAAAGATTCATACAGCAGAAGGGAACCCGGTCAGGACTCAGGAGTCACTCCTGCTAGGCTTGTTTGAAACTGGAATAACATTTTTACTGCCATACCGTCTCTGAGGATGGTATCCAATCATTTGTTGCAGGGTTGCTCATGCAGCGGATAATGCTGTCAGATGAGTAGGCAACGGTTGTCACGTTGAAGGAGCTACCATTGGGTCTTTCCACTTTGATAAACCCTGTACCAGTCGTGTGGTGTTGCTTGTCGATGCAATTGAGCCCGTTGTAGTATTGCGTCTCCACATACTCCTCCCCGTTCACATCCCCACCGTCCAGCACCAACTTCTGGGGTTTGGCCTCGAGGTCGCGGAGCCTCCGAAGCTCCGGCAGGTCGGCGTCGGCGTCGGCCTCCGCCCCACCCTCCCCGGCGTCCGACGGGTCGCTCCGCGGCGGCTTGGAAGGGCGCCTGGGGGCCATGCTGTCGAAGTAGCCCCGCACCTCGGCCTCCACCCGCGCCGCCTCCTCCGGCGGCAGGTGCGGGTCGCTGCGCGCCGGCCGCGTCGTCGCCATGGCGGCTCAGCTCGGTCCAAGACTGGGTTGGCGGGCGGTGGAGTC

Coding Potentia
Explanation CPC Score
noncoding -1.13603
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0312600.1 5 22161470 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0312600.1 osa-miR5537 Cleavage 4.5 13.14 1 22
Osa05LNT0312600.1 osa-miR818f Cleavage 4.5 18.533 1 21
Osa05LNT0312600.1 osa-miR2091-5p Cleavage 4.0 16.798 1 21
Osa05LNT0312600.1 osa-miR2931 Translation 4.5 15.335 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0312600.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0312600.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0312600.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0312600.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0312600.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0312600.1 5 nan Physiological trait Eating quality RM163 RM31
Osa05LNT0312600.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus