Transcript

Sequence

>Osa05LNT0313900.1

GTCCAGACGATGATGTGTCCATATCCGAGCAGGCGCGCTCCGCCGCCGCCGCCTCCCCCTCCGGCGCCACCGCCGCCGAGGTCGACGGCTCGGCAGTGCAGGGGCGCTTATCGGCGGGGTGCTCCTCGTCCGCCTCGCCGGGAGCGCCAGGGTCGGAGTCGGGCCGCTTCCGGCAGCGATCCATCCTCCCCCACCCCGCCCGCCGCTACTCCTCCCCCCTCGTCGCCCTCGCCCTCGCCGTCGCCGTCGCCGTGGACGAAAGCCGCAAACCACCACTCGCCCTTGGCCACTCTTGATCGATCGATCGGTCACCGATCGG

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.904917

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0313900.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0313900.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0313900.1	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0313900.1	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0313900.1	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0313900.1	5	nan	Resistance or Tolerance	Drought tolerance	C43	RZ70
Osa05LNT0313900.1	5	nan	Resistance or Tolerance	Drought tolerance	C43	RZ70
Osa05LNT0313900.1	5	APAGE1	Physiological trait	Eating quality	nan	nan
Osa05LNT0313900.1	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0313900.1	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus