\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0028200.1

ATAGGTTGCATGATCTATTTTGTATTAATAAAAATGTTATACGTATGTACATGTGTGGATATCATGTAAATACAAAACTTAATACCTTCACGTATATACGTATATGTATAAACTTTATATCTTAACTAATTAAAAGATTCGTATTTTTCCAATCGTCACCTCCTTTTCACCCGTGATTTTTGTTAAAAAAACCGTCTATTTCGTCCGTCGTCCCTCATAGGAGTCGAGTCCGATTCCCTAAAAAAATCCCCCATCTTGATCCCCAAATAAATCAAACAATGAGACAACCAAAAACACTCATAGGATTCGAGTCCGATTCCTTAAAAAAAAATCCCCCAACTTGATCCCCAAATGAATCAAACAATGAGACAACCAAAAACAACATAAAGAGCAATTTTAATCCGAGTAGAGCTCATGAACTTGATCCCAATGTCCGATTCCATGAAAAAGAAACAAACTCGGGCGAAAAAAAAGGCGACCGGATCTGCCCTCGGCCGCCGCCGTATCCACCAGCGGCCGTCGCCGACTGCCGTTGGATCGCCCTCAGCCGCCGCCACCGCCTCCGGATCCACTCGCCGCCGCCACCGCTGCCGCCGGATCCACCCGACGCCACCACCGCCACCGAAGGCAGAAGAGAGGCGGCGGCCGTCACCGACGCCACCACCACCGACTGCCGTCGGATCCGCTCTTGGCCGCCGCCACCGCTGCCGCCGCCGCCACCGCTGCCGCCGCCGCCACCGCCGGATCCACCCATCGGAAGTAGTGGAGGGAGCCGCCGTGGCCGCTCACGGTGGGGAAGGCCGCGGACGCCGCTAGCGACCAGAGAGAGGACGGGATCCAGTCATCGGTGGAGGATCCGCGCAAGAGGGGAGCAGGGGAGATGACGGGATGCGTGTGGGAGGGGAAGAAGTCGTCGGTTCCCTCCCCGCCCACCTGCCTCGGTTGCCCGTCTGCCGCCTCGCTTTGCTCCAACCGTGGCTCTCTCGCCGGCTGCCACACCGCTGCGTTGCAGTCTTACATAGAGGGAGAACAGAAACGATGGCTGGGAGAGAGAGAACGAGAGAGTGATAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.960241
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0028200.1 1 25146894 T C
Osa01LNT0028200.1 1 25147140 A G
Osa01LNT0028200.1 1 25147187 A G
Osa01LNT0028200.1 1 25147225 A G
Osa01LNT0028200.1 1 25147279 A G
Osa01LNT0028200.1 1 25147300 A G
Osa01LNT0028200.1 1 25147462 A G
Osa01LNT0028200.1 1 25147467 T C
Osa01LNT0028200.1 1 25146967 T C
Osa01LNT0028200.1 1 25146942 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0028200.1 osa-miR7693-5p Cleavage 5.0 20.855 1 24
Osa01LNT0028200.1 osa-miR2104 Translation 4.5 16.983 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0028200.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0028200.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0028200.1 1 nan Resistance or Tolerance Drought tolerance RM129 RM5
Osa01LNT0028200.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0028200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0028200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0028200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0028200.1 1 nan Physiological trait Source activity RG532 RM472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus