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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0314200.1

TTCACTTCAAATCATATCAACATTAGTGGCAGAAATTAATTGGCATAGCTTCAAAACACAAACAAAAAAAAACTGCCGTTTAGAATAGCTGAAGATTTACATCATTCTTTAGATACACAAAAAATCAAAAGACACTACAATATTTCAGTACAAGACACAAGTACACACCACTGAACATCATCAGAAACCTGATTTCTAACTAAACATTTGCCCAAATATGGATTGCCAAATCCAGGTCCATGATGCACAGTTGCACACCCACTGAACTCTGAATGTATATGTAAATAGACAACAAACTCTTCCATTTTATAAATACAGGTAGGCAAAATTCAGCATTCCTATCAAAATATACAGTTACACACTAGCACGTAATCTCTTGGTTCTGCAGTTACTTGATTGACAGTCCAGTATAGCGCAAGGCAAGAATCGAAAAGTGCATACTGCAGAAGTTCAGAACAGCATCACAGGGTGAAGGGAACACCAGAGTCATCGGTTGAAGGCTGCAGTGCATTAATCTTGATAACATATTTCTTTCCACTCGACATGCTGTAGCCCTCGGAGCTCATGTGCAAATCATCTGAACCATCATACAATGTGGAATCCTCATCCTCATAAGCATTACCGATACGGCCACCACATTTGCGGCAGATCAACCTTGTCCTCTTTCTGAACAAACCCCAGGAGCGCCTTGAATGGAAGTATGGCATGCAGCTCACCTCATCAGTTTGTGTGAACCGACTCTCGTCGATCGCAAAGAATGAGATTACACCTTTCCTGATCTGCTTACCATACTTGGATCCAATGTTCGCTGTGTTCCGTGTTGAGGAGCTCAGGTTCAATGCATAGCCACAGTAACCACAGCTGTAGGCGACTTCCTTGGCGGAGGAGCAGGAGTAGCTCCTCTCGGGCGTCCTCACCATGCTCCTTCCTCCTCCGTGCGCATCGGATCCCGATCGATTTGGGAGGAAGAGGAGGAGAAGAGAAGAGCGCTTGGGTTGGGTTGCTTGGCTCTCCAACGGTCAGTGCAGGGCAGGGCAAAGGCGACCGCGCCGCGCTGGCTCGGCTGGCTCTGATCTGTTCCCTTCGGCGCAGGGGATGATGAGCTGCGTGGTGATCGAGACGGCTCGGACCGTCGGCGCGAGG

Coding Potentia
Explanation CPC Score
noncoding -1.23699
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0314200.1 osa-miR1846d-3p Cleavage 5.0 24.64 1 20
Osa05LNT0314200.1 osa-miR1852 Cleavage 4.0 12.879 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0314200.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0314200.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0314200.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0314200.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0314200.1 5 nan Physiological trait Eating quality RM163 RM31
Osa05LNT0314200.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0314200.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0314200.1 5 nan Resistance or Tolerance Drought tolerance C43 RZ70
Osa05LNT0314200.1 5 nan Resistance or Tolerance Drought tolerance C43 RZ70
Osa05LNT0314200.1 5 APAGE1 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus