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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0314500.1

GCGTATCTCCTCTTCCTCCTCCCTCCCCGACGATGTGTGTCTCCGTCGAGCCACCTTCCTCAACCTCCGCGCCACGCACGCAACTAGCCCACCAGCCGCGTCGTTTCCCCACCCTCCTCGCTCCGCCCCACCTCCTAGGCTGCTCGCCTCCTCGGCGTATCACAAAAAACTGAAACCGCCGGCACCCACCAACAAGCGGTCTTGATGGCTGACATTAAAAACCGAGCAGATTTCATGGATGTCGAGCTCTTCACCATGAAACGTCGTTCGATTTGTTTTCTTAGTCCTCCCCTGAAATCTTCAACCTCAGACTTCACCTTGAACACACCCAAGGGGGTGTATATTAACCTCCCGAAGAATTAAGAAAGGAGGGATTGGTTTTGTTTCGGCTCTACTTCAAGTTTCTACCGTCAGCGTTAAACAGGATTGAAATTTATTTAGTATATACACTTCACTAAAGGAGACAATTCATGGTATGAGGATCACTGCTGCTGGAGCAATCTATATATACATTGGGTAATCATAATTGCCTCATATTCATTCTTGGTCACATGATTTCTATATATTATTATATGCCCATCCTGCGACACATGCTGTGCAAGAGGTACAAGTAATTCCTTCCATAACAACAGTCTAGCTATTTTTATACACATTGATCCCTAATTTTTTATATGTCTATCCAGATTCTTATTTGGTATATGATGATCCTACTTTACACCCATATAACTTAATTTTTCATTTCTTTTCTGGCTAGAGTATAAAGAATGCTCTTTGTAATAGCAAAATTGAATAGTTTGTCAAATATTGGGTTTTTCATCAAGGCCATCCGACTATTTATCTTCAGTTTTATGGATCTTTCAATCCAAAATACTACAAGTTGTTTTTTTTCTGTTGACAGAAATTTTCAGCACTAAGACATATTGGTATCCTAAGAAACAGATAAAATTAAGATGGATCTTCAACAAGAACCATCCAGCAGGTTATCACTGCTCACCAATTAAGAAATGTTATTACATTCTTTTCTCTATTACTCTATTCCTGGTGCCTTGCATTCCATGCACCATCATTTTCTTTTCTTGAGGGTAATTTTTACCCGGCCTCTATATCCAACCGGTGAACCGAATATATGCAGACTTTTAAATTGGGAGCTTAATCCCTCAAATAATACAATCTGAAATTCACTCCTATAAAAATTTGAAGTCGAGACCTTAGGTGTTACTCGGGTCACTGCATGTCTATACTTTGCCATTTATTGCGCTTTCCTTCAGGAATCCCCAAACTTTCAAACAAGATATGCTGCTCATTTTTCATTTGTGCGTTCTTCACAAGTGAACGTGGATGCAGTTGCTCAAGCGAATTCTTCTACAAGCCCAACAATTTCGTTAATTGCCAAGCAAATCTACAAGTGGAGACCTCAACAAACTGAGCTTTTAACATTTCTTACATAAAAAATGGATTACCTCAAATGCAGGTCATTCTAACTGAAGAGAAGGTCAATAACAATAATCATAATTAGTGTCTCTTGCGTTGCTATTACTATCTGAGAAATTTCTATCTTAACCTTGACGGATGTTGC

Coding Potentia
Explanation CPC Score
noncoding -1.20679
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0314500.1 5 23098113 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0314500.1 osa-miR5806 Cleavage 5.0 16.654 1 21
Osa05LNT0314500.1 osa-miR5837.1 Cleavage 5.0 13.388 1 21
Osa05LNT0314500.1 osa-miR171h Translation 5.0 14.363 1 21
Osa05LNT0314500.1 osa-miR2094-3p Cleavage 5.0 18.92 1 22
Osa05LNT0314500.1 osa-miR5337a Cleavage 4.5 12.902 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0314500.1 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
Osa05LNT0314500.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0314500.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0314500.1 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0314500.1 5 nan Physiological trait Eating quality RM163 RM31
Osa05LNT0314500.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0314500.1 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0314500.1 5 nan Resistance or Tolerance Drought tolerance C43 RZ70
Osa05LNT0314500.1 5 nan Resistance or Tolerance Drought tolerance C43 RZ70
Osa05LNT0314500.1 5 APAGE1 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus