\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0314500.2

GCGTATCTCCTCTTCCTCCTCCCTCCCCGACGATGTGTGTCTCCGTCGAGCCACCTTCCTCAACCTCCGCGCCACGCACGCAACTAGCCCACCAGCCGCGTCGTTTCCCCACCCTCCTCGCTCCGCCCCACCTCCTAGGCTGCTCGCCTCCTCGGCGTATCACAAAAAACTGAAACCGCCGGCACCCACCAACAAGCGGTCTTGATGGCTGACATTAAAAACCGAGCAGATTTCATGGATGTCGAGCTCTTCACCATGAAACGTCGTTCGATTTGTTTTCTTAGTCCTCCCCTGAAATCTTCAACCTCAGACTTCACCTTGAACACACCCAAGGGGGTGTATATTAACCTCCCGAAGAATTAAGAAAGGAGGGATTGGTTTTGTTTCGGCTCTACTTCAAGTTTCTACCGTCAGCGTTAAACAGGATTGAAATTTATTTAGTATATACACTTCACTAAAGGAGACAATTCATGGTATGAGGATCACTGGTATGTATACTAATTTTACATCACGCTGCATACCTGCACCGATAGTTCATTTTAATTCTGAATTCCGGATGCAAATTGCTTACTATCGTTGTAACAGCTGCTGGAGCAATCTATATATACATTGGGTAATCATAATTGCCTCATATTCATTCTTGGTCACATGATTTCTATATATTATTATATGCCCATCCTGCGACACATGCTGTGCAAGAGGTACAAGTAATTCCTTCCATAACAACAGTCTAGCTATTTTTATACACATTGATCCCTAATTTTTTATATGTCTATCCAGATTCTTATTTGGTATATGATGATCCTACTTTACACCCATATAACTTAATTTTTCATTTCTTTTCTGGCTAGAGTATAAAGAATGCTCTTTGTAATAGCAAAATTGAATAGTTTGTCAAATATTGGGTTTTTCATCAAGGCCATCCGACTATTTATCTTCAGTTTTATGGATCTTTCAATCCAAAATACTACAAGTTGTTTTTTTTCTGTTGACAGAAATTTTCAGCACTAAGACATATTGGTATCCTAAGAAACAGATAAAATTAAGATGGATCTTCAACAAGAACCATCCAGCAGGAATCCCCAAACTTTCAAACAAGATATGCTGCTCATTTTTCATTTGTGCGTTCTTCACAAGTGAACGTGGATGCAGTTGCTCAAGCGAATTCTTCTACAAGCCCAACAATTTCGTTAATTGCCAAGCAAATCTACAAGTGGAGACCTCAACAAACTGAGCTTTTAACATTTCTTACATAAAAAATGGATTACCTCAAATGCAGGTCATTCTAACTGAAGAGAAGGTCAATAACAATAATCATAATTAGTGTCTCTTGCGTTGCTATTACTATCTGAGAAATTTCTATCTTAACCTTGACGGATGTTGC

Coding Potentia
Explanation CPC Score
noncoding -1.19409
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa05LNT0314500.2 5 23098113 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0314500.2 osa-miR6246 Cleavage 3.0 14.875 1 23
Osa05LNT0314500.2 osa-miR171h Translation 5.0 14.363 1 21
Osa05LNT0314500.2 osa-miR2094-3p Cleavage 5.0 18.92 1 22
Osa05LNT0314500.2 osa-miR5337a Cleavage 4.5 12.902 1 21
Osa05LNT0314500.2 osa-miR5837.1 Cleavage 5.0 13.388 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0314500.2 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0314500.2 5 nan Physiological trait Eating quality RM305 RM178
Osa05LNT0314500.2 5 nan Resistance or Tolerance Drought tolerance C43 RZ70
Osa05LNT0314500.2 5 nan Resistance or Tolerance Drought tolerance C43 RZ70
Osa05LNT0314500.2 5 APAGE1 Physiological trait Eating quality nan nan
Osa05LNT0314500.2 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0314500.2 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0314500.2 5 nan Morphological trait Seed RM163 RM31
Osa05LNT0314500.2 5 nan Physiological trait Eating quality RM163 RM31
Osa05LNT0314500.2 5 qNBL-5 Resistance or Tolerance Blast resistance RZ649 RZ225
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus